|
|
affe00f6fb
|
Line termination change and old code.
|
2021-11-16 00:31:48 -05:00 |
|
hyginn
|
5fa5dd9ff7
|
New retrieval logic
|
2021-09-18 12:36:46 -04:00 |
|
hyginn
|
33ba40a252
|
Bugfix in AddProtein - paste() returns deparsed expression for single-column lists...
|
2020-11-09 22:02:27 +10:00 |
|
hyginn
|
55a0d18a66
|
patch a problem where jsonlite:: oversimplifies from single entries to array, rather than list.
|
2020-10-13 22:38:47 +10:00 |
|
hyginn
|
5524832a75
|
bugfix: wrong iterator
|
2020-10-13 21:45:14 +10:00 |
|
hyginn
|
a50688e0d0
|
bugfix: jsonlite::fromJSON() chokes on a blank
|
2020-10-13 20:35:45 +10:00 |
|
hyginn
|
804e3a73b7
|
bugfix: import all taxonomy IDs as integer
|
2020-10-13 20:33:04 +10:00 |
|
hyginn
|
0541612e0b
|
Bugfixes
|
2020-10-13 20:27:56 +10:00 |
|
hyginn
|
4d071cf8d5
|
Add code and utility functions for database export of protein annotations to JSON - towards sharing annotations on the Student Wiki Public page
|
2020-10-13 16:08:35 +10:00 |
|
hyginn
|
169ca58b92
|
Bugfix: q -> Q
|
2020-09-25 21:51:04 +10:00 |
|
hyginn
|
abb146f828
|
bugfix in dbFetchPrositeFeatures(); add return of actual motif sequence; stylistic updates
|
2020-09-25 11:29:28 +10:00 |
|
hyginn
|
36140bc984
|
updates; vectorized dbFetchUniProtSeq()
|
2020-09-25 10:47:41 +10:00 |
|
hyginn
|
2775c7c9a8
|
Updates to UniProtIDmap, and address httr/curl initialization bug
|
2020-09-25 02:27:42 +10:00 |
|
hyginn
|
76b18a8a35
|
Update PPI-Analysis assets and code
|
2020-09-23 20:47:26 +10:00 |
|
hyginn
|
cf90c52a61
|
Update the ScCC network data
|
2020-09-23 14:06:58 +10:00 |
|
hyginn
|
f90f581963
|
ToDo ...
|
2020-09-22 21:02:27 +10:00 |
|
hyginn
|
7536473c5d
|
Updated MYSPE data and entire workflow. Changed all .RData to .rds
|
2020-09-21 14:28:24 +10:00 |
|
hyginn
|
37ef655d47
|
2020 updates - deactivate for maintenance
|
2020-09-18 21:56:30 +10:00 |
|
hyginn
|
84aa2dca0b
|
prefix function with package name
|
2019-11-14 22:12:33 -05:00 |
|
hyginn
|
cffd803c23
|
Use requireNamespace(), <package>::<function>() idiom,
Biocmanager:: - not biocLite()
|
2019-01-08 17:11:25 +10:00 |
|
hyginn
|
2ab162e375
|
Maintance: typos, update of prosite URL
|
2018-12-02 18:52:36 +10:00 |
|
hyginn
|
1dd87e7473
|
Maintainance fixes and UniProt API change bugfix
|
2018-10-30 21:27:42 -04:00 |
|
hyginn
|
82841de74a
|
Change blockWidth > 60 from error to warning
|
2017-11-20 19:00:55 -05:00 |
|
hyginn
|
a58e35f060
|
Fixed parsing and added missing logic
|
2017-11-16 11:47:53 -05:00 |
|
hyginn
|
0da30ec109
|
bugfix
|
2017-11-01 23:29:30 -04:00 |
|
hyginn
|
553b042f20
|
MSA unit, and supporting files
|
2017-10-28 23:09:21 -04:00 |
|
hyginn
|
044990d1c9
|
coding style:
|
2017-10-28 23:08:31 -04:00 |
|
hyginn
|
e57db9e9a0
|
Added data files for PSI-BLAST unit, updated some other JSONs
|
2017-10-23 21:00:39 -04:00 |
|
hyginn
|
bc4afc97aa
|
Updates for BIN-ALI-BLAST
|
2017-10-23 12:37:09 -04:00 |
|
hyginn
|
153e7dcf00
|
Update: FASTA files may contain gap and stop characters
|
2017-10-14 18:26:16 -04:00 |
|
hyginn
|
32a45fc059
|
Add UniProtIDmap() function
|
2017-10-08 15:59:56 -04:00 |
|
hyginn
|
7ed5309901
|
Supporting script to create a cell cycle subset from STRING data. Used for FND-MAT-Graphs_and_networks deliverables
|
2017-10-07 11:52:33 -04:00 |
|
hyginn
|
27dd73664b
|
add httr and xml2 package, add scripted data download functions
|
2017-10-06 08:51:12 -04:00 |
|
hyginn
|
e1dbd1d268
|
update function to remove FASTA headers (line-break terminated substrings that begin with a ">")
|
2017-09-29 12:25:00 -04:00 |
|
hyginn
|
95accd9608
|
new scripts
|
2017-09-25 01:31:40 -04:00 |
|
