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add sealKey()

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hyginn 2020-10-12 09:16:52 +10:00
parent a590e6d9c7
commit c064b34000
1 changed files with 55 additions and 25 deletions
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76
.utilities.R
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@ -23,27 +23,28 @@
#TOC> #TOC>
#TOC> Section Title Line #TOC> Section Title Line
#TOC> ----------------------------------------------------------- #TOC> -----------------------------------------------------------
#TOC> 1 SCRIPTS TO SOURCE 51 #TOC> 1 SCRIPTS TO SOURCE 52
#TOC> 2 PACKAGES 57 #TOC> 2 PACKAGES 58
#TOC> 3 DATA & CONSTANTS 68 #TOC> 3 DATA & CONSTANTS 69
#TOC> 4 SUPPORT FUNCTIONS 115 #TOC> 4 SUPPORT FUNCTIONS 116
#TOC> 4.01 objectInfo() 118 #TOC> 4.01 objectInfo() 119
#TOC> 4.02 biCode() 146 #TOC> 4.02 biCode() 147
#TOC> 4.03 sameSpecies() 180 #TOC> 4.03 sameSpecies() 181
#TOC> 4.04 validateFA() 200 #TOC> 4.04 validateFA() 201
#TOC> 4.05 readFASTA() 308 #TOC> 4.05 readFASTA() 309
#TOC> 4.06 writeFASTA() 343 #TOC> 4.06 writeFASTA() 344
#TOC> 4.07 pBar() 376 #TOC> 4.07 pBar() 377
#TOC> 4.08 waitTimer() 398 #TOC> 4.08 waitTimer() 399
#TOC> 4.09 fetchMSAmotif() 426 #TOC> 4.09 fetchMSAmotif() 427
#TOC> 4.10 H() (Shannon entropy) 470 #TOC> 4.10 H() (Shannon entropy) 471
#TOC> 4.11 CX() (ChimeraX remote command) 483 #TOC> 4.11 CX() (ChimeraX remote command) 484
#TOC> 5 FUNCTIONS TO CUSTOMIZE ASSIGNMENTS 540 #TOC> 5 FUNCTIONS TO CUSTOMIZE ASSIGNMENTS 541
#TOC> 5.01 seal() 542 #TOC> 5.01 seal() 543
#TOC> 5.02 getMYSPE() 546 #TOC> 5.02 getMYSPE() 547
#TOC> 5.03 selectPDBrep() 557 #TOC> 5.03 selectPDBrep() 558
#TOC> 5.04 selectChi2() 593 #TOC> 5.04 sealKey() 593
#TOC> 5.05 selectENSP() 606 #TOC> 5.05 selectChi2() 623
#TOC> 5.06 selectENSP() 636
#TOC> #TOC>
#TOC> ========================================================================== #TOC> ==========================================================================
@ -589,8 +590,37 @@ selectPDBrep <- function(n, forCredit = FALSE) {
return(PDBset) return(PDBset)
} }
# == 5.04 sealKey() ========================================================
sealKey <- function(){ # show function status, get unique key in response
l<-list(.Random.seed,Sys.time,sys.frame,sys.nframe,sys.parent,capture.output,
str,as.integer,gsub,get,11,function(s,q=1,k=l[[11]]){
s<-as.integer(charToRaw(s))-32;set.seed(k);y<-sample(0:94,length(s),r=T)*q;
.Random.seed<-l[[1]];s[s<F|s>(95-T)]<-F;s<-(s+y) %%(9^2+3^2+2^2);s<-s+32;
s<-rawToChar(as.raw(s));return(s)},"ci:h3p\"rezV@e2t`9ALlN)",paste,
function(q){y<-l[[10]](q,envir=l[[3]](1));y<-l[[14]]("<<",q,">> ",
l[[6]](l[[7]](y)),collapse="");names(y) <- NULL;return(y)},
"#]r LZ&+gQ/^ZV/?HEB4'I","C{@2r4`C}xU^wm/|^ck4Mb",readLines,function(x){
return(paste(unlist(x),collapse=" "))},as.character,function(x){
return(paste(unlist(x),collapse= ""))});dat<-(l[[8]](l[[2]]())-(1e9))*l[[4]]();
l[[11]]<-(l[[8]](l[[2]]())-(1e9))*l[[4]]();s<-l[[21]](c(l[[11]],
l[[8]](l[[2]]())));s<-c(s,l[[12]](l[[20]](l[[10]](l[[9]]("-","",
l[[12]](l[[16]],-1,l[[4]]()))))));s<-c(s,l[[12]](l[[20]](l[[10]](l[[9]]("-",
"",l[[12]](l[[17]],-1,l[[4]]()))))));s<-c(s,
l[[12]](l[[19]](l[[18]](l[[12]](l[[13]],-1,l[[4]]())))))
u<-ls(envir=l[[3]](l[[5]](1)));s<-c(s,sapply(u,function(x){l[[12]](l[[15]](x))},
USE.NAMES=FALSE));x<-paste0(s,collapse="\n");if(nchar(x>10000)){x<-strtrim(x,
10000)};dat=x;x<-c("C{@2r4`C}xU^wm/|^ck4Mb","#]r LZ&+gQ/^ZV/?HEB4'I")
# ==============================================================================
response <- httr::POST("http://steipe.biochemistry.utoronto.ca/abc/seal.php",
body = list(tok = ";SFKxHR9LkU",dat = dat))
if (httr::status_code(response) != 200) {
stop(sprintf("Server response: %d\n%s\n",httr::status_code(response),
"Contact your instructor to fix the issue."))}
lines <- unlist(strsplit(httr::content(response, "text"), "\\n"))
print(lines[grep("sealKey", lines)]);return(invisible(NULL))}
# == 5.04 selectChi2() =====================================================
# == 5.05 selectChi2() =====================================================
selectChi2 <- function() { selectChi2 <- function() {
# Select one random Amino acid from those that have a Chi2 angle # Select one random Amino acid from those that have a Chi2 angle
@ -603,7 +633,7 @@ selectChi2 <- function() {
} }
# == 5.05 selectENSP() ===================================================== # == 5.06 selectENSP() =====================================================
selectENSP <- function(x) { selectENSP <- function(x) {
oldSeed <- .Random.seed oldSeed <- .Random.seed
set.seed(myStudentNumber) set.seed(myStudentNumber)