diff --git a/scripts/ABC-createRefDB.R b/scripts/ABC-createRefDB.R index 233f009..c4a45b9 100644 --- a/scripts/ABC-createRefDB.R +++ b/scripts/ABC-createRefDB.R @@ -16,12 +16,15 @@ myDB <- dbInit() -myDB <- dbAddProtein( myDB, fromJSON("./data/MBP1_SACCE.json")) -myDB <- dbAddProtein( myDB, fromJSON("./data/refMBP1Proteins.json")) -myDB <- dbAddProtein( myDB, fromJSON("./data/refAPSES_PSI-BLAST.json")) -myDB <- dbAddTaxonomy( myDB, fromJSON("./data/refTaxonomy.json")) -myDB <- dbAddFeature( myDB, fromJSON("./data/refFeatures.json")) -myDB <- dbAddAnnotation( myDB, fromJSON("./data/refAnnotations.json")) +myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/MBP1_SACCE.json")) +myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/refMBP1Proteins.json")) +myDB <- dbAddProtein(myDB, jsonlite::fromJSON("./data/refAPSES_PSI-BLAST.json")) + +myDB <- dbAddTaxonomy(myDB, jsonlite::fromJSON("./data/refTaxonomy.json")) + +myDB <- dbAddFeature(myDB, jsonlite::fromJSON("./data/refFeatures.json")) + +myDB <- dbAddAnnotation( myDB, jsonlite::fromJSON("./data/refAnnotations.json")) # [END]