diff --git a/.myProfile.R b/.myProfile.R index 2ee42ef..fea5a93 100644 --- a/.myProfile.R +++ b/.myProfile.R @@ -6,9 +6,6 @@ # UofT eMail address. # myStudentNumber numeric Your UofT student number. Take care to have this # correct. -# MYSPE char A string with the species name of a genome- -# sequenced fungus. Which species this is will be -# determined in the BIN-MYSPE unit. # # NOTE: # After you have updated this script, save the file in your "myScripts" folder. @@ -18,6 +15,5 @@ myEMail <- "" # e.g. "u.franklin@utoronto.ca" myStudentNumber <- # e.g. 1003141592 -MYSPE <- "" # e.g. "Neurospora crassa OR74A" # [END] diff --git a/.utilities.R b/.utilities.R index 8d9e7f5..8b26e21 100644 --- a/.utilities.R +++ b/.utilities.R @@ -1,11 +1,12 @@ -# .utilities.R +# tocID <- "./.utilities.R" # # Miscellaneous R code to suppport the project # -# Version: 1.3.1 -# Date: 2017 09 - 2019 11 +# Version: 1.4 +# Date: 2017-09 - 2020-09 # Author: Boris Steipe # +# V 1.4 Maintenance # V 1.3.1 prefix Biostrings:: to subseq() # V 1.3 load msa support functions # V 1.2 update database utilities to support 2017 version of JSON sources @@ -17,15 +18,39 @@ # # ============================================================================== -# ====== SCRIPTS ============================================================= + +#TOC> ========================================================================== +#TOC> +#TOC> Section Title Line +#TOC> ----------------------------------------------------------- +#TOC> 1 SCRIPTS TO SOURCE 42 +#TOC> 2 SUPPORT FUNCTIONS 49 +#TOC> 2.1 objectInfo() 52 +#TOC> 2.2 biCode() 80 +#TOC> 2.3 pBar() 114 +#TOC> 2.4 waitTimer() 136 +#TOC> 2.5 fetchMSAmotif() 164 +#TOC> 2.6 H() (Shannon entropy) 208 +#TOC> 3 DATA 222 +#TOC> 3.1 REFspecies 224 +#TOC> 4 FUNCTIONS TO CUSTOMIZE ASSIGNMENTS 239 +#TOC> 4.1 getMYSPE() 242 +#TOC> 4.2 selectPDBrep() 251 +#TOC> +#TOC> ========================================================================== + + +# = 1 SCRIPTS TO SOURCE =================================================== source("./scripts/ABC-dbUtilities.R") source("./scripts/ABC-writeALN.R") source("./scripts/ABC-writeMFA.R") -# ====== SUPPORT FUNCTIONS ===================================================== +# = 2 SUPPORT FUNCTIONS =================================================== + +# == 2.1 objectInfo() ====================================================== objectInfo <- function(x) { # Function to combine various information items about R objects # @@ -53,6 +78,7 @@ objectInfo <- function(x) { } +# == 2.2 biCode() ========================================================== biCode <- function(s) { # Make a 5 character "biCode" from a binomial name by concatening # the uppercased first three letter of the first word and the first @@ -86,6 +112,7 @@ biCode <- function(s) { } +# == 2.3 pBar() ============================================================ pBar <- function(i, l, nCh = 50) { # Draw a progress bar in the console # i: the current iteration @@ -107,6 +134,7 @@ pBar <- function(i, l, nCh = 50) { } +# == 2.4 waitTimer() ======================================================= waitTimer <- function(t, nIntervals = 50) { # pause and wait for t seconds and display a progress bar as # you are waiting @@ -134,6 +162,7 @@ waitTimer <- function(t, nIntervals = 50) { } +# == 2.5 fetchMSAmotif() =================================================== fetchMSAmotif <- function(ali, mot) { # Retrieve a subset from ali that spans the sequence in mot. # Biostrings package must be installed. @@ -177,40 +206,23 @@ fetchMSAmotif <- function(ali, mot) { } - - -# ====== PDB ID selection ====================================================== - -selectPDBrep <- function(n, seed = as.numeric(Sys.time())) { - # Select n PDB IDs from a list of high-resolution, non-homologous, single - # domain, single chain structure files that represent a CATH topology - # group. - # Parameters: - # n num number of IDs to return - # seed num a seed for the RNG - # - # Value: char PDB IDs - # - # Note: the list is loaded from an RData file in the "./data" directory. - # If you use this function for a course submissio, it MUST be invoked as: - # - # selectPDBrep(n, seed = myStudentNumber) - # - # ... and myStudentNumber MUST be correctly initialized - - load("./data/pdbRep.RData") # loads pdbRep - if (n > length(pdbRep)) { - stop(sprintf("There are only %d PDB IDs in the table to choose from.", - length(pdbRep))) - } - set.seed(seed) - return(sample(pdbRep, n)) +# == 2.6 H() (Shannon entropy) ============================================= +H <- function(x, N) { + # calculate the Shannon entropy of the vector x given N possible states + # (in bits). + # H(x) = - sum_i(P(x_i) * log2(P(x_i)); 0 * log(0) == 0 + t <- table(x) + if (missing(N)) { N <- length(t) } + if (length(t) > N ) { stop("N can't be smaller than observed states.") } + h <- sum(- (t / length(x)) * log2(t / length(x))) + return(h) } -# ====== DATA ================================================================== +# = 3 DATA ================================================================ +# == 3.1 REFspecies ======================================================== # 10 species of fungi for reference analysis. # http://steipe.biochemistry.utoronto.ca/abc/index.php/Reference_species_for_fungi REFspecies <- c("Aspergillus nidulans", @@ -222,8 +234,52 @@ REFspecies <- c("Aspergillus nidulans", "Saccharomyces cerevisiae", "Schizosaccharomyces pombe", "Ustilago maydis", - "Wallemia mellicola" -) + "Wallemia mellicola") + + +# = 4 FUNCTIONS TO CUSTOMIZE ASSIGNMENTS ================================== + + +# == 4.1 getMYSPE() ======================================================== +getMYSPE <- function(x) { + dat <- readRDS("./data/sDat.rds") + map <- readRDS("./data/MYSPEmap.rds") + key <- gsub(".+(....).$", "\\1", x) + return(dat$species[map[key, "iMYSPE"]]) +} + + +# == 4.2 selectPDBrep() ==================================================== +selectPDBrep <- function(n, seed) { + # Select n PDB IDs from a list of high-resolution, non-homologous, single + # domain, single chain structure files that represent a CATH topology + # group. + # Parameters: + # n num number of IDs to return + # seed num a seed for the RNG + # + # Value: char PDB IDs + # + # Note: the list is loaded from an .rds file in the "./data" directory. + # If you use this function for a course submission, it MUST be invoked as: + # + # selectPDBrep(n, seed = myStudentNumber) + # + # ... and myStudentNumber MUST be correctly initialized + + pdbRep <- readRDS("./data/pdbRep.rds") # loads pdbRep + + if (n > length(pdbRep)) { + stop(sprintf("There are only %d PDB IDs in the table to choose from.", + length(pdbRep))) + } + oldSeed <- .Random.seed + set.seed(seed) + PDBset <- sample(pdbRep, n) + .Random.seed <- oldSeed + return(PDBset) +} + # [END] diff --git a/BIN-MYSPE.R b/BIN-MYSPE.R index f8b1e93..cf7a22c 100644 --- a/BIN-MYSPE.R +++ b/BIN-MYSPE.R @@ -9,11 +9,12 @@ # Purpose: A Bioinformatics Course: # R code accompanying the BIN-MYSPE unit # -# Version: 1.0.1 +# Version: 1.1 # -# Date: 2017 09 21 +# Date: 2020-09-18 # Author: Boris Steipe (boris.steipe@utoronto.ca) # +# V 1.1 2020 Workflow changes # V 1.0.1 Move ABC-makeMYSPElist.R to ./scripts directory # V 1.0 Final code, after rewriting BLAST parser and updating MYSPElist # V 0.1 First code copied from BCH441_A03_makeMYSPElist.R @@ -33,13 +34,13 @@ #TOC> ========================================================================== -#TOC> +#TOC> #TOC> Section Title Line #TOC> ----------------------------------------------- -#TOC> 1 Preparations 39 -#TOC> 2 Suitable MYSPE Species 51 -#TOC> 3 Adopt "MYSPE" 65 -#TOC> +#TOC> 1 Preparations 47 +#TOC> 2 Suitable MYSPE Species 59 +#TOC> 3 Adopt "MYSPE" 83 +#TOC> #TOC> ========================================================================== @@ -47,7 +48,7 @@ # # Execute the two conditionals below: -if (! file.exists(".myProfile.R")) { +if (! file.exists("scripts/.myProfile.R")) { stop("PANIC: profile file does not exist. Fix problem or ask for help.") } if (! exists("myStudentNumber")) { @@ -64,31 +65,80 @@ if (! exists("myStudentNumber")) { # A detailed description of the process of compiling the list of genome # sequenced fungi with protein annotations and Mbp1 homologues is in the file -# ./scripts/ABC-makeMYSPElist.R +# ./scripts/ABC-makeMYSPElist.R In brief, data for genome-sequenced fungi +# was retrieved from https://fungi.ensembl.org; a search for homologues to +# yeast Mbp1 was performed with BLAST at the NCBI, and the data was merged. +# A representative organism at each genus-level was chosen from those hits +# that actual;ly have a homologue. Finally, a mapping table was constructed to +# asymmetrically retrieve unique species: a student number will retrieve +# a species, but (public) knowledge of the species cannot reconstruct the +# student number. # Task: Study ./scripts/ABC-makeMYSPElist.R, it implements a typical workflow -# of selecting and combining data from public-domain data resources. +# of selecting and combining data from various data resources. Studying +# it will give you a better sense of how such workflows can be +# implemented in practice. + # = 3 Adopt "MYSPE" ======================================================= +# Execute: +( MYSPE <- getMYSPE(myStudentNumber) ) -# In the code below, we load the resulting vector of species name, then pick one -# of them in a random but reproducible way, determined by your student number. +# If this produced an error, this session has not been properly set up. You +# may not yet have run init() and edited .myProfile.R , or that file is not +# in your myScripts/ folder. Fix this, and execute source(".Rprofile") . -load("data/MYSPEspecies.RData") # load the species names -set.seed(myStudentNumber) # seed the random number generator -MYSPE <- sample(MYSPEspecies, 1) # pick a species at random -set.seed(NULL) # reset the random number generator -# write the result to your personalized profile data so we can use the result in -# other functions -cat(sprintf("MYSPE <- \"%s\"\n", MYSPE), file = ".myProfile.R", append = TRUE) +# If this produced NA, your Student Number may not be correct, or you are not +# in my class-list. Contact me. +# Otherwise, this should have printed a species name. Your unique species +# for this course. -MYSPE # so, which species is it ... ? biCode(MYSPE) # and what is it's "BiCode" ... ? -# Task: Note down the species name and its five letter label on your Student +# Task: Note down the species name and its five letter BiCode on your Student # Wiki user page. Use this species whenever this or future assignments refer -# to MYSPE. In code, we will automatically load it from your .myProfile.R file. +# to MYSPE. Whenever you start a session, it will automatically be loaded +# from myScripts/.myProfile.R and is available as MYSPE . +# Here is some more information: +fungiDat <- read.csv("data/Species.csv") + +# number of sequenced fungal genomes: +nrow(fungiDat) + +# sequenced genomes of species: +sel <- MYSPE == gsub("^(\\S+\\s\\S+).*$", "\\1", fungiDat$Name) +( x <- fungiDat[sel, "Name"] ) +Nspc <- length(x) # save this for later ... + +# sequenced genomes of genus: +sel <- gsub("\\s.*", "", MYSPE) == gsub("\\s.*", "", fungiDat$Name) +( x <- fungiDat[sel, "Name"] ) +Ngen <- length(x) - Nspc + +# order: +( x <- unique(fungiDat[sel, "Classification"]) ) +Nord <- sum(fungiDat$Classification == x) - Ngen - Nspc +Nfng <- nrow(fungiDat) - Nord - Ngen - Nspc + +# proportions +pCol <- c("#ed394e", "#ff9582", "#ffd5c4", "#f2f2f0") +pie(c(Nspc, Ngen, Nord, Nfng), + labels = "", + radius = 1, + main = "MYSPE in genome-sequenced fungi", + sub = MYSPE, + col = pCol, + clockwise = TRUE, + init.angle = 90) +legend(x = 1.3, y = 0.8, # position + legend = c("Species", "Genus", "Order", "Fungi"), + y.intersp = 1.5, # line spacing for labels + cex = 0.9, # character size for labels + bty = "n", # "no" box around the legend + pt.cex = 2, # size of colour boxes + pch = 15, + col = pCol) # [END] diff --git a/BIN-PHYLO-Tree_analysis.R b/BIN-PHYLO-Tree_analysis.R index cf60bec..5919df5 100644 --- a/BIN-PHYLO-Tree_analysis.R +++ b/BIN-PHYLO-Tree_analysis.R @@ -110,7 +110,7 @@ ape::nodelabels(text = fungiTree$node.label, # We load the APSES sequence tree that you produced in the # BIN-PHYLO-Tree_building unit: -load(file = "APSEStreeRproml.RData") +apsTree <- readRDS(file = "APSEStreeRproml.rds") plot(apsTree) # default type is "phylogram" plot(apsTree, type = "unrooted") diff --git a/BIN-PHYLO-Tree_building.R b/BIN-PHYLO-Tree_building.R index 2ba15f9..dd7eb65 100644 --- a/BIN-PHYLO-Tree_building.R +++ b/BIN-PHYLO-Tree_building.R @@ -9,12 +9,13 @@ # Purpose: A Bioinformatics Course: # R code accompanying the BIN-PHYLO-Tree_building unit. # -# Version: 1.1 +# Version: 1.2 # -# Date: 2017 10. 31 +# Date: 2017-10 2020-09 # Author: Boris Steipe (boris.steipe@utoronto.ca) # # Versions: +# 1.2 deprecate save()/load() for saveRDS()/readRDS() # 1.1 Change from require() to requireNamespace(), # use ::() idiom throughout, # 1.0 First 2017 version @@ -139,7 +140,7 @@ apsTree <- Rphylip::Rproml(apsIn, path=PROMLPATH) plot(apsTree) # save your tree: -save(apsTree, file = "APSEStreeRproml.RData") +saveRDS(apsTree, file = "APSEStreeRproml.rds") # If this did not work, ask for advice. diff --git a/BIN-PPI-Analysis.R b/BIN-PPI-Analysis.R index becd7f8..2eaeaf4 100644 --- a/BIN-PPI-Analysis.R +++ b/BIN-PPI-Analysis.R @@ -9,12 +9,13 @@ # Purpose: A Bioinformatics Course: # R code accompanying the BIN-PPI-Analysis unit. # -# Version: 1.1 +# Version: 1.2 # -# Date: 2017 08 - 2019 01 +# Date: 2017-08 - 2020-09 # Author: Boris Steipe (boris.steipe@utoronto.ca) # # Versions: +# 1.2 Deprecate save()/load() for saveRDS()/readRDS() # 1.1 Change from require() to requireNamespace(), # use ::() idiom throughout, # use Biocmanager:: not biocLite() @@ -72,7 +73,7 @@ if (! requireNamespace("igraph", quietly = TRUE)) { # a fungal proteome. You can load the saved dataframe here (To read more about # what the numbers mean, see http://www.ncbi.nlm.nih.gov/pubmed/15608232 ). -load("./data/STRINGedges.RData") +STRINGedges <- readRDS("./data/STRINGedges.rds") head(STRINGedges) diff --git a/RPR-Biostrings.R b/RPR-Biostrings.R index 5e8a730..09ad162 100644 --- a/RPR-Biostrings.R +++ b/RPR-Biostrings.R @@ -198,7 +198,7 @@ Biostrings::translate(biosDNAseq[4:15]) Biostrings::toString(biosDNAseq[4:15]) -# save() and load() works like on all other R objects. +# saveRDS() and readRDS() works like on all other R objects. # = 5 More ================================================================ diff --git a/RPR-GEO2R.R b/RPR-GEO2R.R index 3bea234..9632737 100644 --- a/RPR-GEO2R.R +++ b/RPR-GEO2R.R @@ -9,12 +9,13 @@ # Purpose: A Bioinformatics Course: # R code accompanying the RPR_GEO2R unit. # -# Version: 1.2 +# Version: 1.3 # -# Date: 2017 09 - 2019 01 +# Date: 2017-09 - 2020-09 # Author: Boris Steipe # # Versions: +# 1.3 use saveRDS()/readRDS() rather than save()/load() # 1.2 Change from require() to requireNamespace(), # use ::() idiom throughout, # use Biocmanager:: not biocLite() @@ -122,7 +123,9 @@ GSE3635 <- GSE3635[[idx]] # FALLBACK # ... in case the GEO server is not working, load the "GSE3635" object from # the data directory: -# load(file="./data/GSE3635.RData") +# +# GSE3635 <- readRDS(file="./data/GSE3635.rds") + # Checkpoint ... if (! exists("GSE3635")) { diff --git a/data/ABC-INT-Mutation_impact.RData b/data/ABC-INT-Mutation_impact.RData deleted file mode 100644 index 320ea9c..0000000 Binary files a/data/ABC-INT-Mutation_impact.RData and /dev/null differ diff --git a/data/BLASThits.RData b/data/BLASThits.RData deleted file mode 100644 index 31a8bb0..0000000 Binary files a/data/BLASThits.RData and /dev/null differ diff --git a/data/BLASThits.rds b/data/BLASThits.rds new file mode 100644 index 0000000..9e72d35 Binary files /dev/null and b/data/BLASThits.rds differ diff --git a/data/GOLDdata.RData b/data/GOLDdata.RData deleted file mode 100644 index ddf960d..0000000 Binary files a/data/GOLDdata.RData and /dev/null differ diff --git a/data/GSE3635.RData b/data/GSE3635.RData deleted file mode 100644 index 4a7897c..0000000 Binary files a/data/GSE3635.RData and /dev/null differ diff --git a/data/GSE3635.rds b/data/GSE3635.rds new file mode 100644 index 0000000..89a41f1 Binary files /dev/null and b/data/GSE3635.rds differ diff --git a/data/MYSPEmap.rds b/data/MYSPEmap.rds new file mode 100644 index 0000000..b754291 Binary files /dev/null and b/data/MYSPEmap.rds differ diff --git a/data/MYSPEspecies.RData b/data/MYSPEspecies.RData deleted file mode 100644 index 0fbbccb..0000000 Binary files a/data/MYSPEspecies.RData and /dev/null differ diff --git a/data/REFdat.rds b/data/REFdat.rds new file mode 100644 index 0000000..2e86a3a Binary files /dev/null and b/data/REFdat.rds differ diff --git a/data/STRINGedges.RData b/data/STRINGedges.RData deleted file mode 100644 index 56a717c..0000000 Binary files a/data/STRINGedges.RData and /dev/null differ diff --git a/data/STRINGedges.rds b/data/STRINGedges.rds new file mode 100644 index 0000000..a546b87 Binary files /dev/null and b/data/STRINGedges.rds differ diff --git a/data/Species.csv b/data/Species.csv new file mode 100644 index 0000000..1ae3c86 --- /dev/null +++ b/data/Species.csv @@ -0,0 +1,1015 @@ +"","Name","Classification","Taxon ID","Assembly","Accession","Variation database","Regulation database","Whole genome alignments","Other alignments","In peptide compara","In pan-taxonomic compara" +"","Absidia glauca","Mucoromycotina","4829","AG_v1","GCA_900079185.1","","-","-","-","-","-" +"","Absidia repens str. NRRL 1336","Mucoromycotina","90262","Absrep1","GCA_002105175.1","","-","-","-","","-" +"","Acaromyces ingoldii str. MCA 4198 (GCA_003144295)","","215250","Acain1","GCA_003144295.1","","-","-","-","","-" +"","Acidomyces richmondensis (GCA_001572075)","Acidomyces","245562","ASM157207v1","GCA_001572075.1","","-","-","-","-","-" +"","Acidomyces richmondensis BFW (GCA_001592465)","Acidomyces","766039","Acidomyces_richmondensis_BFW_v1.0","GCA_001592465.1","","-","-","-","","-" +"","Acremonium chrysogenum ATCC 11550 (GCA_000769265)","Hypocreales","857340","ASM76926v1","GCA_000769265.1","","-","-","-","","-" +"","Agaricus bisporus var. burnettii JB137-S8 (GCA_000300555)","Agaricales","597362","Agabi_varbur_1","GCA_000300555.1","","-","-","-","","-" +"","Allomyces macrogynus ATCC 38327 (GCA_000151295)","Blastocladiales","578462","A_macrogynus_V3","GCA_000151295.1","","-","-","-","","-" +"","Alternaria alternata str. SRC1lrK2f (GCA_001642055)","Pleosporales","5599","Altal1","GCA_001642055.1","","-","-","-","","-" +"","Amanita muscaria Koide BX008 (GCA_000827485)","Agaricales","946122","Amanita_muscaria_Koide_BX008_v1.0","GCA_000827485.1","","-","-","-","","-" +"","Amanita thiersii Skay4041 (GCA_002554575)","Agaricales","703135","Amanita_thiersii_v1.0","GCA_002554575.1","","-","-","-","","-" +"","Amorphotheca resinae ATCC 22711 (GCA_003019875)","Myxotrichaceae","857342","Amore1","GCA_003019875.1","","-","-","-","","-" +"","Amphiamblys sp. WSBS2006 (GCA_001875675)","Microsporidia","1866961","ASM187567v1","GCA_001875675.1","","-","-","-","","-" +"","Anaeromyces robustus str. S4 (GCA_002104895)","","1754192","Anaeromyces_sp._S4_v1.0","GCA_002104895.1","","-","-","-","","-" +"","Anncaliia algerae PRA109 (GCA_000385855)","Tubulinosematidae","1240240","Annc_alge_PRA109_V4","GCA_000385855.2","","-","-","-","-","-" +"","Anncaliia algerae PRA339 (GCA_000385875)","Tubulinosematidae","1288291","Annc_alge_insect_USDA_JJB_V2","GCA_000385875.2","","-","-","-","","-" +"","Anthracocystis flocculosa PF-1 (GCA_000417875)","Ustilaginales","1277687","Pflocc_1.0","GCA_000417875.1","","-","-","-","","-" +"","Armillaria gallica str. Ar21-2 (GCA_002307695)","Agaricales","47427","Armga1","GCA_002307695.1","","-","-","-","","-" +"","Armillaria ostoyae (GCA_900157425)","Agaricales","47428","version_2","GCA_900157425.1","","-","-","-","","-" +"","Armillaria solidipes str. 28-4 (GCA_002307675)","Agaricales","1076256","Armost1","GCA_002307675.1","","-","-","-","","-" +"","Arthrobotrys oligospora ATCC 24927 (GCA_000225545)","Orbiliales","756982","AOL24927_1.0","GCA_000225545.1","","-","-","-","","-" +"","Ascochyta rabiei str. ArDII (GCA_001630375)","Pleosporales","5454","AscRab1.0","GCA_001630375.1","","-","-","-","","-" +"","Ascoidea rubescens DSM 1968 (GCA_001661345)","Saccharomycetales","1344418","Ascru1","GCA_001661345.1","","-","-","-","","-" +"","Ascosphaera apis ARSEF 7405 (GCA_001636715)","Onygenales","392613","AAP_1.0","GCA_001636715.1","","-","-","-","","-" +"","Ashbya gossypii","Saccharomycetales","284811","ASM9102v1","GCA_000091025.3","","","","","","-" +"","Aspergillus aculeatinus CBS 121060 (GCA_003184765)","Eurotiales","1448322","Aspacu1","GCA_003184765.1","","-","-","-","-","-" +"","Aspergillus aculeatus ATCC 16872 (GCA_001890905)","Eurotiales","690307","Aspac1","GCA_001890905.1","","-","-","-","-","-" +"","Aspergillus arachidicola str. CBS 117610 (GCA_002749805)","Eurotiales","656916","ASM274980v1","GCA_002749805.1","","-","-","-","-","-" +"","Aspergillus bombycis str. NRRL26010 (GCA_001792695)","Eurotiales","109264","ASM179269v1","GCA_001792695.1","","-","-","-","-","-" +"","Aspergillus brasiliensis CBS 101740 (GCA_001889945)","Eurotiales","767769","Aspbr1","GCA_001889945.1","","-","-","-","-","-" +"","Aspergillus brunneoviolaceus CBS 621.78 (GCA_003184695)","Eurotiales","1450534","Aspbru1","GCA_003184695.1","","-","-","-","-","-" +"","Aspergillus calidoustus str. SF006504 (GCA_001511075)","Eurotiales","454130","Acal_Allpaths_LG","GCA_001511075.1","","-","-","-","-","-" +"","Aspergillus campestris IBT 28561 (GCA_002847485)","Eurotiales","1392248","Aspcam1","GCA_002847485.1","","-","-","-","-","-" +"","Aspergillus candidus str. CBS 102.13 (GCA_002847045)","Eurotiales","41067","Aspcand1","GCA_002847045.1","","-","-","-","-","-" +"","Aspergillus carbonarius ITEM 5010 (GCA_001990825)","Eurotiales","602072","Aspca3","GCA_001990825.1","","-","-","-","-","-" +"","Aspergillus clavatus NRRL 1","Eurotiales","344612","ASM271v1","GCA_000002715.1","","-","-","-","","-" +"","Aspergillus cristatus str. GZAAS20.1005 (GCA_001717485)","Eurotiales","573508","ASM171748v1","GCA_001717485.1","","-","-","-","-","-" +"","Aspergillus ellipticus CBS 707.79 (GCA_003184645)","Eurotiales","1448320","Aspell1","GCA_003184645.1","","-","-","-","-","-" +"","Aspergillus eucalypticola CBS 122712 (GCA_003184535)","Eurotiales","1448314","Aspeuc1","GCA_003184535.1","","-","-","-","-","-" +"","Aspergillus fischeri NRRL 181","Eurotiales","331117","ASM14964v1","GCA_000149645.2","","-","-","-","","-" +"","Aspergillus flavus AF70 (GCA_000952835)","Eurotiales","1392242","ASM95283v1","GCA_000952835.1","","-","-","-","-","-" +"","Aspergillus flavus NRRL3357","Eurotiales","332952","JCVI-afl1-v2.0","GCA_000006275.2","","-","-","-","","-" +"","Aspergillus fumigatus (GCA_002234985)","Eurotiales","746128","ASM223498v1","GCA_002234985.1","","-","-","-","","-" +"","Aspergillus fumigatus A1163","Eurotiales","451804","ASM15014v1","GCA_000150145.1","","-","-","-","-","-" +"","Aspergillus fumigatus Af293","Eurotiales","330879","ASM265v1","GCA_000002655.1","","-","-","-","-","-" +"","Aspergillus fumigatus Z5 (GCA_001029325)","Eurotiales","1437362","ASM102932v1","GCA_001029325.1","","-","-","-","-","-" +"","Aspergillus fumigatus var. RP-2014 (GCA_000731615)","Eurotiales","1476192","AspFumNiv1.0","GCA_000731615.1","","-","-","-","-","-" +"","Aspergillus glaucus CBS 516.65 (GCA_001890805)","Eurotiales","1160497","Aspgl1","GCA_001890805.1","","-","-","-","-","-" +"","Aspergillus heteromorphus CBS 117.55 (GCA_003184545)","Eurotiales","1448321","Asphet1","GCA_003184545.1","","-","-","-","-","-" +"","Aspergillus indologenus CBS 114.80 (GCA_003184685)","Eurotiales","1450541","Aspind1","GCA_003184685.1","","-","-","-","-","-" +"","Aspergillus japonicus CBS 114.51 (GCA_003184785)","Eurotiales","1448312","Aspjap1","GCA_003184785.1","","-","-","-","-","-" +"","Aspergillus lacticoffeatus CBS 101883 (GCA_003184595)","Eurotiales","1450533","Asplac1","GCA_003184595.1","","-","-","-","-","-" +"","Aspergillus lentulus (GCA_001445615)","Eurotiales","293939","Alt_assembly01","GCA_001445615.1","","-","-","-","-","-" +"","Aspergillus luchuensis CBS 106.47 (GCA_001890685)","Eurotiales","1137211","Aspfo1","GCA_001890685.1","","-","-","-","-","-" +"","Aspergillus luchuensis str. RIB 2604 (GCA_001602395)","Eurotiales","1069201","AspL_2604","GCA_001602395.1","","-","-","-","-","-" +"","Aspergillus neoniger CBS 115656 (GCA_003184625)","Eurotiales","1448310","Aspneo1","GCA_003184625.1","","-","-","-","-","-" +"","Aspergillus nidulans","Eurotiales","227321","ASM1142v1","GCA_000011425.1","","-","-","-","","" +"","Aspergillus nidulans FGSC A4 (GCA_000149205)","Eurotiales","227321","ASM14920v2","GCA_000149205.2","","-","-","-","-","-" +"","Aspergillus niger","Eurotiales","5061","ASM285v2","GCA_000002855.2","","-","-","","","-" +"","Aspergillus niger (GCA_001515345)","Eurotiales","5061","ASM151534v1","GCA_001515345.1","","-","-","-","-","-" +"","Aspergillus niger (GCA_900248155)","Eurotiales","5061","Aniger_ATCC_64974_N402","GCA_900248155.1","","-","-","-","-","-" +"","Aspergillus niger ATCC 1015 (GCA_000230395)","Eurotiales","380704","ASPNI_v3.0","GCA_000230395.2","","-","-","-","-","-" +"","Aspergillus nomius NRRL 13137 (GCA_001204775)","Eurotiales","1509407","ASM120477v1","GCA_001204775.1","","-","-","-","-","-" +"","Aspergillus novofumigatus IBT 16806 (GCA_002847465)","Eurotiales","1392255","Aspnov1","GCA_002847465.1","","-","-","-","-","-" +"","Aspergillus ochraceoroseus IBT 24754 (GCA_002846915)","Eurotiales","1392256","Aspergillus_ochraceoroseus_IBT_24754_v1.1","GCA_002846915.2","","-","-","-","-","-" +"","Aspergillus ochraceoroseus str. SRRC1432 (GCA_000986665)","Eurotiales","138278","ASM98666v1","GCA_000986665.1","","-","-","-","-","-" +"","Aspergillus oryzae 100-8 (GCA_000691885)","Eurotiales","1197718","Aspergillus_oryzae_100-8","GCA_000691885.1","","-","-","-","-","-" +"","Aspergillus oryzae 3.042 (GCA_000269785)","Eurotiales","1160506","AspOry3042","GCA_000269785.2","","-","-","-","-","-" +"","Aspergillus oryzae RIB40","Eurotiales","510516","ASM18445v3","GCA_000184455.3","","-","-","-","","-" +"","Aspergillus oryzae str. BCC7051 (GCA_002007945)","Eurotiales","5062","ASM200794v1","GCA_002007945.1","","-","-","-","-","-" +"","Aspergillus parasiticus SU-1 (GCA_000956085)","Eurotiales","1403190","ASM95608v1","GCA_000956085.1","","-","-","-","-","-" +"","Aspergillus piperis CBS 112811 (GCA_003184755)","Eurotiales","1448313","Asppip1","GCA_003184755.1","","-","-","-","-","-" +"","Aspergillus rambellii str. SRRC1468 (GCA_000986645)","Eurotiales","308745","ASM98664v1","GCA_000986645.1","","-","-","-","-","-" +"","Aspergillus ruber CBS 135680 (GCA_000600275)","Eurotiales","1388766","Eurhe1","GCA_000600275.1","","-","-","-","-","-" +"","Aspergillus saccharolyticus JOP 1030-1 (GCA_003184585)","Eurotiales","1450539","Aspsac1","GCA_003184585.1","","-","-","-","-","-" +"","Aspergillus sclerotiicarbonarius CBS 121057 (GCA_003184635)","Eurotiales","1448318","Aspscle1","GCA_003184635.1","","-","-","-","-","-" +"","Aspergillus sclerotioniger CBS 115572 (GCA_003184525)","Eurotiales","1450535","Aspscl1","GCA_003184525.1","","-","-","-","-","-" +"","Aspergillus steynii IBT 23096 (GCA_002849105)","Eurotiales","1392250","Aspste1","GCA_002849105.1","","-","-","-","-","-" +"","Aspergillus sydowii CBS 593.65 (GCA_001890705)","Eurotiales","1036612","Aspsy1","GCA_001890705.1","","-","-","-","-","-" +"","Aspergillus taichungensis str. IBT 19404 (GCA_002850765)","Eurotiales","482145","Asptaic1","GCA_002850765.1","","-","-","-","-","-" +"","Aspergillus terreus NIH2624","Eurotiales","341663","ASM14961v1","GCA_000149615.1","","-","-","-","","-" +"","Aspergillus thermomutatus (GCA_002237265)","Eurotiales","41047","ASM223726v1","GCA_002237265.1","","-","-","-","-","-" +"","Aspergillus tubingensis CBS 134.48 (GCA_001890745)","Eurotiales","767770","Asptu1","GCA_001890745.1","","-","-","-","-","-" +"","Aspergillus turcosus (GCA_002234965)","Eurotiales","1245748","ASM223496v1","GCA_002234965.1","","-","-","-","-","-" +"","Aspergillus turcosus (GCA_002234975)","Eurotiales","1245748","ASM223497v1","GCA_002234975.1","","-","-","-","-","-" +"","Aspergillus udagawae str. IFM 46973 (GCA_001078395)","Eurotiales","91492","Aud_assembly01","GCA_001078395.1","","-","-","-","-","-" +"","Aspergillus ustus str. 3.3904 (GCA_000812125)","Eurotiales","40382","Austus1.0","GCA_000812125.1","","-","-","-","-","-" +"","Aspergillus uvarum CBS 121591 (GCA_003184745)","Eurotiales","1448315","Aspuva1","GCA_003184745.1","","-","-","-","-","-" +"","Aspergillus vadensis CBS 113365 (GCA_003184925)","Eurotiales","1448311","Aspvad1","GCA_003184925.1","","-","-","-","-","-" +"","Aspergillus versicolor CBS 583.65 (GCA_001890125)","Eurotiales","1036611","Aspve1","GCA_001890125.1","","-","-","-","-","-" +"","Aspergillus violaceofuscus CBS 115571 (GCA_003184705)","Eurotiales","1450538","Aspvio1","GCA_003184705.1","","-","-","-","-","-" +"","Aspergillus wentii DTO 134E9 (GCA_001890725)","Eurotiales","1073089","Aspwe1","GCA_001890725.1","","-","-","-","-","-" +"","Aureobasidium melanogenum CBS 110374 (GCA_000721775)","Dothideales","1043003","Aureobasidium_pullulans_var._melanogenum_CBS_110374_v1.0","GCA_000721775.1","","-","-","-","","-" +"","Aureobasidium namibiae CBS 147.97 (GCA_000721765)","Dothideales","1043004","Aureobasidium_pullulans_var._namibiae_CBS_147.97_v1.0","GCA_000721765.1","","-","-","-","","-" +"","Aureobasidium pullulans (GCA_001678115)","Dothideales","5580","ASM167811v1","GCA_001678115.1","","-","-","-","-","-" +"","Aureobasidium pullulans EXF-150 (GCA_000721785)","Dothideales","1043002","Aureobasidium_pullulans_var._pullulans_EXF-150_assembly_version_1.0","GCA_000721785.1","","-","-","-","","-" +"","Aureobasidium subglaciale EXF-2481 (GCA_000721755)","Dothideales","1043005","Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0","GCA_000721755.1","","-","-","-","","-" +"","Babjeviella inositovora NRRL Y-12698 (GCA_001661335)","Saccharomycetales","984486","Babin1","GCA_001661335.1","","-","-","-","","-" +"","Basidiobolus meristosporus CBS 931.73 (GCA_002104905)","","1314790","Basme2finSC","GCA_002104905.1","","-","-","-","","-" +"","Batrachochytrium dendrobatidis JAM81 (GCA_000203795)","Rhizophydiales","684364","v1.0","GCA_000203795.1","","-","-","-","-","-" +"","Batrachochytrium dendrobatidis JEL423 (GCA_000149865)","Rhizophydiales","403673","BD_JEL423","GCA_000149865.1","","-","-","-","","-" +"","Batrachochytrium salamandrivorans str. BS (GCA_002006685)","Rhizophydiales","1357716","Batr_sala_BS_V1","GCA_002006685.1","","-","-","-","","-" +"","Baudoinia panamericana UAMH 10762 (GCA_000338955)","Capnodiales","717646","Bauco1","GCA_000338955.1","","-","-","-","","-" +"","Beauveria bassiana","Hypocreales","176275","ASM168263v1","GCA_001682635.1","","-","-","","","-" +"","Beauveria bassiana ARSEF 2860 (GCA_000280675)","Hypocreales","655819","ASM28067v1","GCA_000280675.1","","-","-","-","-","-" +"","Beauveria bassiana D1-5 (GCA_000770705)","Hypocreales","1245745","BBA1.0","GCA_000770705.1","","-","-","-","-","-" +"","Beauveria bassiana str. JEF-007 (GCA_002871155)","Hypocreales","176275","ASM287115v1","GCA_002871155.1","","-","-","-","-","-" +"","Bifiguratus adelaidae str. AZ0501","Mucoromycotina","1938954","ASM226119v1","GCA_002261195.1","","-","-","-","","-" +"","Bipolaris maydis ATCC 48331 (GCA_000354255)","Pleosporales","665024","CocheC4_1","GCA_000354255.1","","-","-","-","-","-" +"","Bipolaris maydis C5 (GCA_000338975)","Pleosporales","701091","CocheC5_3","GCA_000338975.1","","-","-","-","","-" +"","Bipolaris oryzae ATCC 44560 (GCA_000523455)","Pleosporales","930090","Cochliobolus_miyabeanus_v1.0","GCA_000523455.1","","-","-","-","","-" +"","Bipolaris sorokiniana ND90Pr (GCA_000338995)","Pleosporales","665912","Cocsa1","GCA_000338995.1","","-","-","-","","-" +"","Bipolaris victoriae FI3 (GCA_000527765)","Pleosporales","930091","Cochliobolus_victoriae_v1.0","GCA_000527765.1","","-","-","-","","-" +"","Bipolaris zeicola 26-R-13 (GCA_000523435)","Pleosporales","930089","Cochliobolus_carbonum_v1.0","GCA_000523435.1","","-","-","-","","-" +"","Blastomyces dermatitidis ATCC 18188 (GCA_000151595)","Onygenales","653446","BD_ATCC18188_V1","GCA_000151595.1","","-","-","-","-","-" +"","Blastomyces dermatitidis ATCC 26199 (GCA_000166155)","Onygenales","447095","BD_ATCC26199_V2","GCA_000166155.1","","-","-","-","-","-" +"","Blastomyces dermatitidis ER-3 (GCA_000003525)","Onygenales","559297","BD_ER3_V1","GCA_000003525.2","","-","-","-","","-" +"","Blastomyces gilchristii SLH14081 (GCA_000003855)","Onygenales","559298","BD_SLH14081_V1","GCA_000003855.2","","-","-","-","","-" +"","Blastomyces percursus str. EI222 (GCA_001883805)","Onygenales","1658174","Blas_perc_EI222_V1","GCA_001883805.1","","-","-","-","","-" +"","Blumeria graminis","Erysiphales","546991","EF2","GCA_000151065.2","","-","-","","","-" +"","Blumeria graminis f. sp. tritici 96224 (GCA_000418435)","Erysiphales","1268274","Bgt_454_newbler_assembly","GCA_000418435.1","","-","-","-","-","-" +"","Botryobasidium botryosum FD-172 SS1 (GCA_000697705)","Cantharellales","930990","Botbo1","GCA_000697705.1","","-","-","-","","-" +"","Botrytis cinerea B05.10","Sclerotiniaceae","332648","ASM83294v1","GCA_000143535.4","","-","-","","","-" +"","Botrytis cinerea BcDW1 (GCA_000349525)","Sclerotiniaceae","1290391","BcDW1","GCA_000349525.1","","-","-","-","-","-" +"","Botrytis cinerea T4 (GCA_000227075)","Sclerotiniaceae","999810","BotFuc_Mar2011","GCA_000227075.1","","-","-","-","-","-" +"","Brettanomyces bruxellensis AWRI1499 (GCA_000259595)","Saccharomycetales","1124627","AWRI1499_v1.0","GCA_000259595.1","","-","-","-","","-" +"","Byssochlamys spectabilis No. 5 str. Paecilomyces variotii No. 5 (NBRC109023) (GCA_000497085)","Eurotiales","1356009","PVAR5_assembly01","GCA_000497085.1","","-","-","-","","-" +"","Cadophora sp. DSE1049 (GCA_003073865)","Helotiales","1485229","Cadsp1","GCA_003073865.1","","-","-","-","","-" +"","Calocera cornea HHB12733 (GCA_001632435)","Dacrymycetales","1353952","Calco1","GCA_001632435.1","","-","-","-","","-" +"","Calocera viscosa TUFC12733 (GCA_001630345)","Dacrymycetales","1330018","Calvi1","GCA_001630345.1","","-","-","-","","-" +"","Candida albicans 12C (GCA_000773845)","Saccharomycetales","1094981","Cand_albi_12C_V2","GCA_000773845.1","","-","-","-","-","-" +"","Candida albicans 19F (GCA_000775445)","Saccharomycetales","1094987","Cand_albi_19F_V2","GCA_000775445.1","","-","-","-","-","-" +"","Candida albicans Ca6 (GCA_000784695)","Saccharomycetales","1165368","Cand_albi_Ca6_V2","GCA_000784695.1","","-","-","-","-","-" +"","Candida albicans GC75 (GCA_000773735)","Saccharomycetales","1094988","Cand_albi_GC75_V1","GCA_000773735.1","","-","-","-","-","-" +"","Candida albicans L26 (GCA_000775455)","Saccharomycetales","1094982","Cand_albi_L26_V2","GCA_000775455.1","","-","-","-","-","-" +"","Candida albicans P34048 (GCA_000775465)","Saccharomycetales","1094991","Cand_albi_P34048_V1","GCA_000775465.1","","-","-","-","-","-" +"","Candida albicans P37005 (GCA_000773745)","Saccharomycetales","1094985","Cand_albi_P37005_V2","GCA_000773745.1","","-","-","-","-","-" +"","Candida albicans P37037 (GCA_000773825)","Saccharomycetales","1094992","Cand_albi_P37037_V1","GCA_000773825.1","","-","-","-","-","-" +"","Candida albicans P37039 (GCA_000784515)","Saccharomycetales","1094993","Cand_albi_P37039_V1","GCA_000784515.1","","-","-","-","-","-" +"","Candida albicans P57055 (GCA_000775505)","Saccharomycetales","1094996","Cand_albi_P57055_V1","GCA_000775505.1","","-","-","-","-","-" +"","Candida albicans P57072 (GCA_000773805)","Saccharomycetales","1094990","Cand_albi_P57072_V1","GCA_000773805.1","","-","-","-","-","-" +"","Candida albicans P60002 (GCA_000784525)","Saccharomycetales","1094986","Cand_albi_P60002_V1","GCA_000784525.1","","-","-","-","-","-" +"","Candida albicans P75010 (GCA_000784575)","Saccharomycetales","1094994","Cand_albi_P75010_V1","GCA_000784575.1","","-","-","-","-","-" +"","Candida albicans P75016 (GCA_000784595)","Saccharomycetales","1094995","Cand_albi_P75016_V1","GCA_000784595.1","","-","-","-","-","-" +"","Candida albicans P75063 (GCA_000775525)","Saccharomycetales","1094997","Cand_albi_P75063_V1","GCA_000775525.1","","-","-","-","-","-" +"","Candida albicans P76055 (GCA_000784505)","Saccharomycetales","1094998","Cand_albi_P76055_V1","GCA_000784505.1","","-","-","-","-","-" +"","Candida albicans P76067 (GCA_000784495)","Saccharomycetales","1094999","Cand_albi_P76067_V1","GCA_000784495.1","","-","-","-","-","-" +"","Candida albicans P78042 (GCA_000784615)","Saccharomycetales","1095000","Cand_albi_P78042_V1","GCA_000784615.1","","-","-","-","-","-" +"","Candida albicans P78048 (GCA_000773725)","Saccharomycetales","1094989","Cand_albi_P78048_V1","GCA_000773725.1","","-","-","-","-","-" +"","Candida albicans P87 (GCA_000774085)","Saccharomycetales","1094984","Cand_albi_P87_V2","GCA_000774085.1","","-","-","-","-","-" +"","Candida albicans P94015 (GCA_000773755)","Saccharomycetales","1094983","Cand_albi_P94015_V1","GCA_000773755.1","","-","-","-","-","-" +"","Candida albicans SC5314 (GCA_000784635)","Saccharomycetales","237561","Cand_albi_SC5314_V4","GCA_000784635.1","","-","-","-","","-" +"","Candida albicans SC5314 (GCA_000784655)","Saccharomycetales","237561","Cand_albi_SC5314_V3","GCA_000784655.1","","-","-","-","-","-" +"","Candida albicans WO-1 (GCA_000149445)","Saccharomycetales","294748","ASM14944v2","GCA_000149445.2","","-","-","-","-","-" +"","Candida dubliniensis CD36 (GCA_000026945)","Saccharomycetales","573826","ASM2694v1","GCA_000026945.1","","-","-","-","-","-" +"","Candida maltosa Xu316 (GCA_000344705)","Saccharomycetales","1245528","Cmaltosa_v01","GCA_000344705.1","","-","-","-","-","-" +"","Candida orthopsilosis Co 90-125 (GCA_000315875)","Saccharomycetales","1136231","ASM31587v1","GCA_000315875.1","","-","-","-","-","-" +"","Candida parapsilosis str. CDC317 (GCA_000182765)","Saccharomycetales","5480","ASM18276v2","GCA_000182765.2","","-","-","-","","-" +"","Candida tropicalis MYA-3404 (GCA_000006335)","Saccharomycetales","294747","ASM633v3","GCA_000006335.3","","-","-","-","","-" +"","Capronia coronata CBS 617.96 (GCA_000585585)","Chaetothyriomycetidae","1182541","Capr_coro_CBS_617_96_V1","GCA_000585585.1","","-","-","-","","-" +"","Capronia epimyces CBS 606.96 (GCA_000585565)","Chaetothyriomycetidae","1182542","Capr_epim_CBS_606_96_V1","GCA_000585565.1","","-","-","-","","-" +"","Catenaria anguillulae PL171 (GCA_002102555)","Blastocladiales","765915","Catan2","GCA_002102555.1","","-","-","-","","-" +"","Ceraceosorus bombacis (GCA_900000165)","","401625","Ceraceosorus_bombacis","GCA_900000165.1","","-","-","-","-","-" +"","Ceraceosorus guamensis str. MCA 4658 (GCA_003144195)","","1522189","Cersp1","GCA_003144195.1","","-","-","-","","-" +"","Ceratocystis platani str. CFO (GCA_000978885)","Microascales","88771","ASM97888v1","GCA_000978885.1","","-","-","-","","-" +"","Cercospora berteroae (GCA_002933655)","Capnodiales","357750","Cbert_1","GCA_002933655.1","","-","-","-","","-" +"","Cercospora beticola (GCA_002742065)","Capnodiales","122368","CB0940_V2","GCA_002742065.1","","-","-","-","","-" +"","Cercospora zeina str. CMW25467 (GCA_002844615)","Capnodiales","348901","ASM284461v1","GCA_002844615.1","","-","-","-","","-" +"","Chaetomium globosum CBS 148.51 (GCA_000143365)","Sordariales","306901","ASM14336v1","GCA_000143365.1","","-","-","-","","-" +"","Chaetomium thermophilum var. thermophilum DSM 1495 (GCA_000221225)","Sordariales","759272","CTHT_3.0","GCA_000221225.1","","-","-","-","","-" +"","Choanephora cucurbitarum str. KUS-F28377 (GCA_001683725)","Mucoromycotina","101091","ASM168372v1","GCA_001683725.1","","-","-","-","","-" +"","Cladophialophora bantiana CBS 173.52 (GCA_000835475)","Chaetothyriomycetidae","1442370","Clad_bant_CBS_173_52_V1","GCA_000835475.1","","-","-","-","","-" +"","Cladophialophora carrionii CBS 160.54 (GCA_000365165)","Chaetothyriomycetidae","1279043","Clad_carr_CBS_160_54_V1","GCA_000365165.2","","-","-","-","-","-" +"","Cladophialophora carrionii str. KSF (GCA_001700775)","Chaetothyriomycetidae","86049","ASM170077v1","GCA_001700775.1","","-","-","-","","-" +"","Cladophialophora immunda str. CBS 83496 (GCA_000835495)","Chaetothyriomycetidae","569365","Clad_immu_CBS83496_V1","GCA_000835495.1","","-","-","-","","-" +"","Cladophialophora psammophila CBS 110553 (GCA_000585535)","Chaetothyriomycetidae","1182543","Clad_psam_CBS_110553_V1","GCA_000585535.1","","-","-","-","","-" +"","Cladophialophora yegresii CBS 114405 (GCA_000585515)","Chaetothyriomycetidae","1182544","Clad_yegr_CBS_114405_V1","GCA_000585515.1","","-","-","-","","-" +"","Claviceps purpurea 20.1 (GCA_000347355)","Hypocreales","1111077","ASM34735v1","GCA_000347355.1","","-","-","-","","-" +"","Clavispora lusitaniae ATCC 42720 (GCA_000003835)","Saccharomycetales","306902","ASM383v1","GCA_000003835.1","","-","-","-","","-" +"","Clavispora lusitaniae str. CBS 6936 (GCA_001673695)","Saccharomycetales","36911","ASM167369v2","GCA_001673695.2","","-","-","-","-","-" +"","Clohesyomyces aquaticus str. CBS 115471 (GCA_002105025)","Pleosporales","1231657","Cloaq1","GCA_002105025.1","","-","-","-","","-" +"","Coccidioides immitis H538.4 (GCA_000149815)","Onygenales","396776","ASM14981v1","GCA_000149815.1","","-","-","-","","-" +"","Coccidioides immitis RMSCC 2394 (GCA_000149895)","Onygenales","404692","ASM14989v1","GCA_000149895.1","","-","-","-","-","-" +"","Coccidioides immitis RMSCC 3703 (GCA_000150085)","Onygenales","454286","ASM15008v1","GCA_000150085.1","","-","-","-","-","-" +"","Coccidioides immitis RS (GCA_000149335)","Onygenales","246410","ASM14933v2","GCA_000149335.2","","-","-","-","-","-" +"","Coccidioides posadasii C735 delta SOWgp (GCA_000151335)","Onygenales","222929","JCVI-cpa1-1.0","GCA_000151335.1","","-","-","-","-","-" +"","Coccidioides posadasii RMSCC 3488 (GCA_000150055)","Onygenales","454284","ASM15005v1","GCA_000150055.1","","-","-","-","-","-" +"","Coccidioides posadasii str. Silveira (GCA_000170175)","Onygenales","443226","CPS2","GCA_000170175.2","","-","-","-","","-" +"","Colletotrichum chlorophyti str. NTL11 (GCA_001937105)","Glomerellales","708187","ASM193710v1","GCA_001937105.1","","-","-","-","-","-" +"","Colletotrichum fioriniae PJ7 (GCA_000582985)","Glomerellales","1445577","CFIO01","GCA_000582985.1","","-","-","-","-","-" +"","Colletotrichum gloeosporioides","Glomerellales","1213859","GCA_000319635.1","GCA_000319635.1","","-","-","","","-" +"","Colletotrichum gloeosporioides Cg-14 (GCA_000446055)","Glomerellales","1237896","Colletotrichum_gloeosporioides1","GCA_000446055.1","","-","-","-","-","-" +"","Colletotrichum graminicola","Glomerellales","645133","C_graminicola_M1_001_V1","GCA_000149035.1","","-","-","","","-" +"","Colletotrichum higginsianum","Glomerellales","80884","GCA_000313795.2","GCA_000313795.2","","-","-","","","-" +"","Colletotrichum higginsianum IMI 349063 (GCA_001672515)","Glomerellales","759273","ASM167251v1","GCA_001672515.1","","-","-","-","-","-" +"","Colletotrichum incanum str. MAFF 238704 (GCA_001625285)","Glomerellales","1573173","Ci238704v1","GCA_001625285.1","","-","-","-","-","-" +"","Colletotrichum incanum str. MAFF238712 (GCA_001855235)","Glomerellales","1573173","ASM185523v1","GCA_001855235.1","","-","-","-","-","-" +"","Colletotrichum nymphaeae SA-01 (GCA_001563115)","Glomerellales","1460502","CNYM01","GCA_001563115.1","","-","-","-","-","-" +"","Colletotrichum orbiculare","Glomerellales","1213857","GCA_000350065.1","GCA_000350065.1","","-","-","","","-" +"","Colletotrichum orchidophilum str. IMI 309357 (GCA_001831195)","Glomerellales","1209926","CORC01","GCA_001831195.1","","-","-","-","-","-" +"","Colletotrichum salicis str. CBS 607.94 (GCA_001563125)","Glomerellales","1209931","CSAL01","GCA_001563125.1","","-","-","-","-","-" +"","Colletotrichum simmondsii str. CBS122122 (GCA_001563135)","Glomerellales","703756","CSIM01","GCA_001563135.1","","-","-","-","-","-" +"","Colletotrichum sublineola str. TX430BB (GCA_000696135)","Glomerellales","1173701","ASM69613v1","GCA_000696135.1","","-","-","-","-","-" +"","Colletotrichum tofieldiae str. 0861 (GCA_001625265)","Glomerellales","708197","Ct0861v1","GCA_001625265.1","","-","-","-","-","-" +"","Conidiobolus coronatus NRRL 28638 (GCA_001566745)","","796925","Conidiobolus_coronatus_NRRL28638","GCA_001566745.1","","-","-","-","","-" +"","Coniella lustricola str. B22-T-1 (GCA_003019895)","Sordariomycetidae","2025994","Coniella_lustricola_v1.0","GCA_003019895.1","","-","-","-","","-" +"","Coniochaeta ligniaria NRRL 30616 (GCA_001879275)","Sordariomycetidae","1408157","Conlig_v1.0","GCA_001879275.1","","-","-","-","","-" +"","Coniophora puteana RWD-64-598 SS2 (GCA_000271625)","Boletales","741705","Conpu1","GCA_000271625.1","","-","-","-","","-" +"","Coniosporium apollinis CBS 100218 str. CBS 352.97 (GCA_000281105)","","1168221","Coni_apol_CBS100218__V1","GCA_000281105.1","","-","-","-","","-" +"","Coprinopsis cinerea okayama7#130 (GCA_000182895)","Agaricales","240176","CC3","GCA_000182895.1","","-","-","-","","-" +"","Cordyceps brongniartii RCEF 3172 (GCA_001636735)","Hypocreales","1081107","BBO_1.0","GCA_001636735.1","","-","-","-","","-" +"","Cordyceps confragosa RCEF 1005 (GCA_001636795)","Hypocreales","1081108","LEL_1.0","GCA_001636795.1","","-","-","-","","-" +"","Cordyceps confragosa str. UM487 (GCA_001653215)","Hypocreales","1105325","ASM165321v1","GCA_001653215.1","","-","-","-","-","-" +"","Cordyceps fumosorosea ARSEF 2679 (GCA_001636725)","Hypocreales","1081104","ISF_1.0","GCA_001636725.1","","-","-","-","","-" +"","Cordyceps militaris CM01 (GCA_000225605)","Hypocreales","983644","CmilitarisCM01_v01","GCA_000225605.1","","-","-","-","","-" +"","Cordyceps sp. RAO-2017 (GCA_002591385)","Hypocreales","2004951","Hirsu2","GCA_002591385.1","","-","-","-","","-" +"","Corynespora cassiicola Philippines (GCA_003016335)","Pleosporales","1448308","Corynespora_cassiicola_v1.0","GCA_003016335.1","","-","-","-","","-" +"","Cryptococcus amylolentus CBS 6039 (GCA_001720205)","Tremellales","1295533","Cryp_amyl_CBS6039_V3","GCA_001720205.1","","-","-","-","","-" +"","Cryptococcus amylolentus CBS 6273 (GCA_001720235)","Tremellales","1296118","Cryp_amyl_CBS6273_V2","GCA_001720235.1","","-","-","-","-","-" +"","Cryptococcus depauperatus CBS 7841 (GCA_001720195)","Tremellales","1295531","Filo_depa_CBS7841_V1","GCA_001720195.1","","-","-","-","","-" +"","Cryptococcus depauperatus CBS 7855 (GCA_001720245)","Tremellales","1295532","Filo_depa_CBS7855_V2","GCA_001720245.1","","-","-","-","-","-" +"","Cryptococcus gattii CA1280 (GCA_000836335)","Tremellales","1296109","Cryp_gatt_CA1280_V1","GCA_000836335.1","","-","-","-","-","-" +"","Cryptococcus gattii CA1873 (GCA_000855695)","Tremellales","1296111","Cryp_gatt_CA1873_V1","GCA_000855695.1","","-","-","-","-","-" +"","Cryptococcus gattii E566 (GCA_000875815)","Tremellales","1296102","Cryp_gatt_E566_V1","GCA_000875815.1","","-","-","-","-","-" +"","Cryptococcus gattii EJB2 (GCA_000835745)","Tremellales","1296103","Cryp_gatt_EJB2_V1","GCA_000835745.1","","-","-","-","-","-" +"","Cryptococcus gattii NT-10 (GCA_000935105)","Tremellales","1296108","Cryp_gatt_NT-10_V1","GCA_000935105.1","","-","-","-","-","-" +"","Cryptococcus gattii Ru294 (GCA_000836355)","Tremellales","1296112","Cryp_gatt_Ru294_V1","GCA_000836355.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII 2001/935-1 (GCA_000835815)","Tremellales","1334442","Cryp_gatt_2001_935-1_V1","GCA_000835815.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII 99/473 (GCA_000836455)","Tremellales","1296104","Cryp_gatt_99_473_V1","GCA_000836455.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII CA1014 (GCA_000875795)","Tremellales","1296107","Cryp_gatt_CA1014_V1","GCA_000875795.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII CBS 10090 (GCA_000835765)","Tremellales","1296101","Cryp_gatt_CBS10090_V1","GCA_000835765.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII LA55 (GCA_000836315)","Tremellales","1296106","Cryp_gatt_LA55_V1","GCA_000836315.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII MMRL2647 (GCA_000875855)","Tremellales","1296117","Cryp_gatt_MMRL2647_V2","GCA_000875855.1","","-","-","-","-","-" +"","Cryptococcus gattii VGII R265 (GCA_000149475)","Tremellales","294750","CNB2","GCA_000149475.3","","-","-","-","-","-" +"","Cryptococcus gattii VGII Ram5 (GCA_000836375)","Tremellales","1296110","Cryp_gatt_Ram5_V1","GCA_000836375.1","","-","-","-","-","-" +"","Cryptococcus gattii VGIV IND107 (GCA_000835755)","Tremellales","1296105","Cryp_gatt_IND107_V2","GCA_000835755.1","","-","-","-","-","-" +"","Cryptococcus gattii WM276 (GCA_000185945)","Tremellales","367775","ASM18594v1","GCA_000185945.1","","-","-","-","","-" +"","Cryptococcus neoformans var. grubii 125.91 (GCA_002215885)","Tremellales","1230079","Cryp_neof_125_91_V1","GCA_002215885.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii A1-35-8 (GCA_002221985)","Tremellales","1230081","Cryp_neof_grubii_A1-35-8_V1","GCA_002221985.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii A2-102-5 (GCA_002222375)","Tremellales","1230057","Cryp_neof_A2_102_5_V1","GCA_002222375.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii A5-35-17 (GCA_002222215)","Tremellales","1230080","Cryp_neof_grubii_A5-35-17_V1","GCA_002222215.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii AD1-7a (GCA_002220445)","Tremellales","1230056","Cryp_neof_AD1_7a_V1","GCA_002220445.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii AD1-83a (GCA_002215765)","Tremellales","1230065","Cryp_neof_AD1_83a_V1","GCA_002215765.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii AD2-60a (GCA_002215775)","Tremellales","1230059","Cryp_neof_AD2_60a_V1","GCA_002215775.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Br795 (GCA_002222225)","Tremellales","1230061","Cryp_neof_Br795_V1","GCA_002222225.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Bt1 (GCA_002215705)","Tremellales","1230073","Cryp_neof_Bt1_V1","GCA_002215705.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Bt120 (GCA_002222465)","Tremellales","1230070","Cryp_neof_Bt120_V1","GCA_002222465.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Bt15 (GCA_002222335)","Tremellales","1230071","Cryp_neof_Bt15_V1","GCA_002222335.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Bt63 (GCA_002234625)","Tremellales","1230075","Cryp_neof_Bt63_V1","GCA_002234625.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Bt85 (GCA_002215835)","Tremellales","1230076","Cryp_neof_Bt85_V1","GCA_002215835.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii C23 (GCA_002215825)","Tremellales","1230055","Cryp_neof_C23_V1","GCA_002215825.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii CHC193 (GCA_002222295)","Tremellales","1230064","Cryp_neof_CHC193_V1","GCA_002222295.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii D17-1 (GCA_002222255)","Tremellales","1230058","Cryp_neof_D17_1_V1","GCA_002222255.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Gb118 (GCA_002224005)","Tremellales","1230060","Cryp_neof_Gb118_V1","GCA_002224005.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii H99 (GCA_000149245)","Tremellales","235443","CNA3","GCA_000149245.3","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii MW-RSA1955 (GCA_002222455)","Tremellales","1230066","Cryp_neof_MW_RSA1955_V1","GCA_002222455.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii MW-RSA36 (GCA_002222395)","Tremellales","1230062","Cryp_neof_MW_RSA36_V1","GCA_002222395.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii MW-RSA852 (GCA_002220035)","Tremellales","1230069","Cryp_neof_MW_RSA852_V1","GCA_002220035.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Th84 (GCA_002222315)","Tremellales","1230067","Cryp_neof_Th84_V1","GCA_002222315.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Tu259-1 (GCA_002222325)","Tremellales","1230072","Cryp_neof_Tu259_1_V1","GCA_002222325.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Tu401-1 (GCA_002222475)","Tremellales","1230077","Cryp_neof_Tu401_1_V1","GCA_002222475.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii Ze90-1 (GCA_002222385)","Tremellales","1230078","Cryp_neof_Ze90_1_V1","GCA_002222385.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii c45 (GCA_002215855)","Tremellales","1230068","Cryp_neof_C45_V1","GCA_002215855.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii c8 (GCA_002222405)","Tremellales","1230063","Cryp_neof_C8_V1","GCA_002222405.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CCTP51 (GCA_002217545)","Tremellales","178876","Cryp_neof_grubii_cng10_V1","GCA_002217545.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM20 (GCA_002222115)","Tremellales","178876","Cryp_neof_grubii_cng5_V1","GCA_002222115.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM24 (GCA_002222145)","Tremellales","178876","Cryp_neof_grubii_cng6_V1","GCA_002222145.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM36 (GCA_002222245)","Tremellales","178876","Cryp_neof_grubii_cng2_V1","GCA_002222245.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM50 (GCA_002222135)","Tremellales","178876","Cryp_neof_grubii_cng1_V1","GCA_002222135.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM52 (GCA_002222165)","Tremellales","178876","Cryp_neof_grubii_cng3_V1","GCA_002222165.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. CM64 (GCA_002222025)","Tremellales","178876","Cryp_neof_grubii_cng4_V1","GCA_002222025.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. KN99 (GCA_002216725)","Tremellales","178876","ASM221672v1","GCA_002216725.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. RCT21 (GCA_002222155)","Tremellales","178876","Cryp_neof_grubii_cng11_V1","GCA_002222155.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. RCT54 (GCA_002222015)","Tremellales","178876","Cryp_neof_grubii_cng8_V1","GCA_002222015.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. RCT6 (GCA_002222095)","Tremellales","178876","Cryp_neof_grubii_cng7_V1","GCA_002222095.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. V2 (GCA_002215755)","Tremellales","178876","Cneo_seroA_V2","GCA_002215755.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. grubii str. WM-1408 (GCA_002220045)","Tremellales","178876","Cneo_seroA_WM1408","GCA_002220045.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. neoformans B-3501A (GCA_000149385)","Tremellales","283643","ASM14938v1","GCA_000149385.1","","-","-","-","-","-" +"","Cryptococcus neoformans var. neoformans JEC21","Tremellales","214684","ASM9104v1","GCA_000091045.1","","-","-","-","","-" +"","Cutaneotrichosporon oleaginosum str. IBC0246 (GCA_001027345)","","879819","Triol1","GCA_001027345.1","","-","-","-","","-" +"","Cyberlindnera fabianii str. 65 (GCA_001983305)","Saccharomycetales","36022","ASM198330v1","GCA_001983305.1","","-","-","-","-","-" +"","Cyberlindnera fabianii str. YJS4271 (GCA_003205855)","Saccharomycetales","36022","ASM320585v1","GCA_003205855.1","","-","-","-","","-" +"","Cyberlindnera jadinii NRRL Y-1542 (GCA_001661405)","Saccharomycetales","983966","Cybja1","GCA_001661405.1","","-","-","-","-","-" +"","Cyberlindnera jadinii str. CBS1600 (GCA_001245095)","Saccharomycetales","4903","cj1","GCA_001245095.1","","-","-","-","","-" +"","Cylindrobasidium torrendii FP15055 ss-10 (GCA_000934385)","Agaricales","1314674","Cylto1","GCA_000934385.1","","-","-","-","","-" +"","Cyphellophora europaea CBS 101466 (GCA_000365145)","Chaetothyriomycetidae","1220924","Phia_euro_CBS_101466_V1","GCA_000365145.2","","-","-","-","","-" +"","Dacryopinax primogenitus str. DJM-731 SS1 (GCA_000292625)","Dacrymycetales","1858805","Dacryopinax_sp._DJM_731_SSP1_v1.0","GCA_000292625.1","","-","-","-","","-" +"","Dactylellina haptotyla CBS 200.50 (GCA_000441935)","Orbiliales","1284197","MHA_v2","GCA_000441935.1","","-","-","-","","-" +"","Daedalea quercina L-15889 (GCA_001632345)","Polyporales","1314783","Daequ1","GCA_001632345.1","","-","-","-","","-" +"","Daldinia sp. EC12 (GCA_002120325)","Xylariales","1001832","DalEC12_v.1.0","GCA_002120325.1","","-","-","-","","-" +"","Debaryomyces fabryi str. CBS 789 (GCA_001447935)","Saccharomycetales","58627","debFab1.0","GCA_001447935.1","","-","-","-","","-" +"","Debaryomyces hansenii CBS767 (GCA_000006445)","Saccharomycetales","284592","ASM644v2","GCA_000006445.2","","-","-","-","","-" +"","Diaporthe ampelina (GCA_001006365)","Sordariomycetidae","1214573","UCDDA912v1.0","GCA_001006365.1","","-","-","-","","-" +"","Diaporthe helianthi str. 7/96 (GCA_001702395)","Sordariomycetidae","158607","DHEL01v2","GCA_001702395.2","","-","-","-","","-" +"","Dichomitus squalens LYAD-421 SS1 (GCA_000275845)","Polyporales","732165","Dichomitus_squalens_v1.0","GCA_000275845.1","","-","-","-","","-" +"","Diplocarpon rosae (GCA_002317995)","Helotiales","946125","ASM231799v1","GCA_002317995.1","","-","-","-","","-" +"","Diplodia corticola str. CBS 112549 (GCA_001883845)","Botryosphaeriales","236234","ASM188384v1","GCA_001883845.1","","-","-","-","","-" +"","Diplodia seriata (GCA_001006355)","Botryosphaeriales","420778","UCDDS831v0.1","GCA_001006355.1","","-","-","-","","-" +"","Diplodia seriata str. F98.1 (GCA_001975905)","Botryosphaeriales","420778","Dipser_v1","GCA_001975905.1","","-","-","-","-","-" +"","Dothistroma septosporum","Capnodiales","675120","GCA_000340195.1","GCA_000340195.1","","-","-","","","-" +"","Drechmeria coniospora str. ARSEF 6962 (GCA_001625195)","Hypocreales","98403","ASM162519v1","GCA_001625195.1","","-","-","-","","-" +"","Drechslerella stenobrocha 248 (GCA_000525045)","Orbiliales","1043628","DREv1","GCA_000525045.1","","-","-","-","","-" +"","Edhazardia aedis USNM 41457 (GCA_000230595)","Microsporidia","1003232","Edha_aedis_V4b","GCA_000230595.3","","-","-","-","","-" +"","Elaphomyces granulatus str. OSC145934 (GCA_002240705)","Eurotiales","519963","PX439","GCA_002240705.1","","-","-","-","","-" +"","Elsinoe australis str. NL1 (GCA_003013795)","","40998","ASM301379v1","GCA_003013795.1","","-","-","-","","-" +"","Emergomyces pasteuriana Ep9510 str. UAMH 9510 (GCA_001883825)","Onygenales","1447872","Emmo_past_UAMH9510_V1","GCA_001883825.1","","-","-","-","","-" +"","Emmonsia crescens UAMH 3008 (GCA_001008285)","Onygenales","1247875","ASM100828v1","GCA_001008285.1","","-","-","-","","-" +"","Emmonsia crescens str. UAMH4076 (GCA_002572855)","Onygenales","73230","Emmon_cres_4076_V1","GCA_002572855.1","","-","-","-","-","-" +"","Emmonsia parva UAMH 139 (GCA_001014755)","Onygenales","2060906","ASM101475v1","GCA_001014755.1","","-","-","-","","-" +"","Emmonsia parva str. UAMH130 (GCA_002572885)","Onygenales","2060905","Emmon_parv_130","GCA_002572885.1","","-","-","-","-","-" +"","Emmonsia sp. CAC-2015a str. CBS 136260 (GCA_001660665)","Onygenales","1658172","Emmo_afri_EA111","GCA_001660665.1","","-","-","-","","-" +"","Encephalitozoon cuniculi EcunIII-L (GCA_001078035)","Unikaryonidae","1355160","ECIIIL","GCA_001078035.1","","-","-","-","-","-" +"","Encephalitozoon hellem ATCC 50504 (GCA_000277815)","Unikaryonidae","907965","ASM27781v3","GCA_000277815.3","","-","-","-","-","-" +"","Encephalitozoon intestinalis ATCC 50506 (GCA_000146465)","Unikaryonidae","876142","ASM14646v1","GCA_000146465.1","","-","-","-","-","-" +"","Encephalitozoon romaleae SJ-2008 (GCA_000280035)","Unikaryonidae","1178016","ASM28003v2","GCA_000280035.2","","-","-","-","-","-" +"","Endocarpon pusillum Z07020 (GCA_000464535)","Verrucariales","1263415","EPUS","GCA_000464535.1","","-","-","-","","-" +"","Enterocytozoon bieneusi H348 (GCA_000209485)","Microsporidia","481877","ASM20948v1","GCA_000209485.1","","-","-","-","","-" +"","Enterocytozoon hepatopenaei str. TH1 (GCA_002081675)","Microsporidia","646526","ASM208167v1","GCA_002081675.1","","-","-","-","","-" +"","Enterospora canceri str. GB1 (GCA_002087915)","Microsporidia","1081671","ASM208791v1","GCA_002087915.1","","-","-","-","","-" +"","Epicoccum nigrum str. ICMP 19927 (GCA_002116315)","Pleosporales","105696","ASM211631v1","GCA_002116315.1","","-","-","-","","-" +"","Eremothecium cymbalariae DBVPG#7215 (GCA_000235365)","Saccharomycetales","931890","ASM23536v1","GCA_000235365.1","","-","-","-","","-" +"","Eremothecium gossypii FDAG1 (GCA_000968835)","Saccharomycetales","1034331","ASM96883v1","GCA_000968835.1","","-","-","-","","-" +"","Erysiphe necator (GCA_000798715)","Erysiphales","52586","ASM79871v1","GCA_000798715.1","","-","-","-","","-" +"","Erysiphe pulchra (GCA_002918395)","Erysiphales","225359","ASM291839v1","GCA_002918395.1","","-","-","-","","-" +"","Escovopsis weberi (GCA_001278495)","Hypocreales","150374","ASM127849v1","GCA_001278495.1","","-","-","-","","-" +"","Eutypa lata UCREL1 (GCA_000349385)","Xylariales","1287681","UCREL1V03","GCA_000349385.1","","-","-","-","","-" +"","Exidia glandulosa HHB12029 (GCA_001632375)","","1314781","Exigl1","GCA_001632375.1","","-","-","-","","-" +"","Exophiala aquamarina CBS 119918 (GCA_000709125)","Chaetothyriomycetidae","1182545","Exop_aqua_CBS_119918_V1","GCA_000709125.1","","-","-","-","","-" +"","Exophiala dermatitidis NIH/UT8656 (GCA_000230625)","Chaetothyriomycetidae","858893","Exop_derm_V1","GCA_000230625.1","","-","-","-","","-" +"","Exophiala mesophila str. CBS 40295 (GCA_000836275)","Chaetothyriomycetidae","212818","Exop_meso_CBS40295_V1","GCA_000836275.1","","-","-","-","","-" +"","Exophiala oligosperma str. CBS 72588 (GCA_000835515)","Chaetothyriomycetidae","215243","Exop_olig_CBS72588_V1","GCA_000835515.1","","-","-","-","","-" +"","Exophiala sideris str. CBS 121828 (GCA_000835395)","Chaetothyriomycetidae","1016849","Exop_side_CBS121828_V1","GCA_000835395.1","","-","-","-","","-" +"","Exophiala spinifera str. CBS 89968 (GCA_000836115)","Chaetothyriomycetidae","91928","Exop_spin_CBS89968_V1","GCA_000836115.1","","-","-","-","","-" +"","Exophiala xenobiotica str. CBS 118157 (GCA_000835505)","Chaetothyriomycetidae","348802","Exop_xeno_CBS118157_V1","GCA_000835505.1","","-","-","-","","-" +"","Exserohilum turcica Et28A (GCA_000359705)","Pleosporales","671987","Setospaeria_trucica_Et28A_v1.0","GCA_000359705.1","","-","-","-","","-" +"","Fibroporia radiculosa str. TFFH 294 (GCA_000313525)","Polyporales","599839","ASM31352v1","GCA_000313525.1","","-","-","-","","-" +"","Fibularhizoctonia sp. CBS 109695 (GCA_001630335)","Atheliales","436010","Fibsp1","GCA_001630335.1","","-","-","-","","-" +"","Fistulina hepatica ATCC 64428 (GCA_000934395)","Agaricales","1128425","Fishe1","GCA_000934395.1","","-","-","-","","-" +"","Fomitiporia mediterranea MF3/22 (GCA_000271605)","Hymenochaetales","694068","Fomme1","GCA_000271605.1","","-","-","-","","-" +"","Fomitopsis pinicola FP-58527 SS1 (GCA_000344655)","Polyporales","743788","Fompi3","GCA_000344655.2","","-","-","-","","-" +"","Fonsecaea erecta (GCA_001651985)","Chaetothyriomycetidae","1367422","ASM165198v1","GCA_001651985.1","","-","-","-","","-" +"","Fonsecaea monophora (GCA_001642475)","Chaetothyriomycetidae","254056","ASM164247v1","GCA_001642475.1","","-","-","-","","-" +"","Fonsecaea multimorphosa (GCA_001646985)","Chaetothyriomycetidae","979981","ASM164698v1","GCA_001646985.1","","-","-","-","-","-" +"","Fonsecaea multimorphosa CBS 102226 (GCA_000836435)","Chaetothyriomycetidae","1442371","Fons_mult_CBS_102226_V1","GCA_000836435.1","","-","-","-","","-" +"","Fonsecaea nubica (GCA_001646965)","Chaetothyriomycetidae","856822","ASM164696v1","GCA_001646965.1","","-","-","-","","-" +"","Fonsecaea pedrosoi CBS 271.37 (GCA_000835455)","Chaetothyriomycetidae","1442368","Fons_pedr_CBS_271_37_V1","GCA_000835455.1","","-","-","-","","-" +"","Fusarium culmorum UK99","Hypocreales","1318462","EF1","1318462.1","","-","-","","","-" +"","Fusarium fujikuroi","Hypocreales","5127","EF1","GCA_000315255.1","","-","-","","","-" +"","Fusarium fujikuroi (GCA_001023035)","Hypocreales","5127","ASM102303v1","GCA_001023035.1","","-","-","-","-","-" +"","Fusarium fujikuroi (GCA_001023045)","Hypocreales","5127","ASM102304v1","GCA_001023045.1","","-","-","-","-","-" +"","Fusarium fujikuroi (GCA_001023065)","Hypocreales","5127","ASM102306v1","GCA_001023065.1","","-","-","-","-","-" +"","Fusarium fujikuroi (GCA_900096505)","Hypocreales","5127","version_1","GCA_900096505.1","","-","-","-","-","-" +"","Fusarium fujikuroi (GCA_900096685)","Hypocreales","5127","version_1","GCA_900096685.1","","-","-","-","-","-" +"","Fusarium fujikuroi (GCA_900096705)","Hypocreales","5127","version_1","GCA_900096705.1","","-","-","-","-","-" +"","Fusarium graminearum PH-1 (GCA_000240135)","Hypocreales","229533","ASM24013v3","GCA_000240135.3","","-","-","-","-","-" +"","Fusarium graminearum str. CS3005 (GCA_000599445)","Hypocreales","5518","CS3005v1","GCA_000599445.1","","-","-","-","","-" +"","Fusarium graminearum str. PH-1","Hypocreales","5518","RR1","GCA_900044135.1","","-","-","","-","-" +"","Fusarium langsethiae str. Fl201059 (GCA_001292635)","Hypocreales","179993","ASM129263v1","GCA_001292635.1","","-","-","-","-","-" +"","Fusarium mangiferae (GCA_900044065)","Hypocreales","192010","Genome_assembly_version_1","GCA_900044065.1","","-","-","-","-","-" +"","Fusarium nygamai (GCA_002894225)","Hypocreales","42673","CS10214v1","GCA_002894225.1","","-","-","-","-","-" +"","Fusarium oxysporum","Hypocreales","426428","FO2","GCA_000222805.1","","-","","","","-" +"","Fusarium oxysporum (GCA_900096695)","Hypocreales","5507","version_1","GCA_900096695.1","","-","-","-","-","-" +"","Fusarium oxysporum FOSC 3-a (GCA_000271745)","Hypocreales","909455","FO_FOSC_3_a_V1","GCA_000271745.2","","-","-","-","-","-" +"","Fusarium oxysporum Fo47 (GCA_000271705)","Hypocreales","660027","FO_Fo47_V1","GCA_000271705.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. conglutinans race 2 54008 str. 54008 (PHW808) (GCA_000260215)","Hypocreales","1089457","FO_PHW808_V1","GCA_000260215.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. cubense race 1 (GCA_000350345)","Hypocreales","1229664","Foc1_1.0","GCA_000350345.1","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. cubense race 4 (GCA_000350365)","Hypocreales","1229665","Foc4_1.0","GCA_000350365.1","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. cubense tropical race 4 54006 str. 54006 (II5) (GCA_000260195)","Hypocreales","1089451","FO_II5_V1","GCA_000260195.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. lycopersici 4287 (GCA_000149955)","Hypocreales","426428","ASM14995v2","GCA_000149955.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. lycopersici MN25 (GCA_000259975)","Hypocreales","1080343","FO_MN25_V1","GCA_000259975.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. melonis 26406 str. 26406 (melonis) (GCA_000260495)","Hypocreales","1089452","FO_melonis_V1","GCA_000260495.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. pisi HDV247 (GCA_000260075)","Hypocreales","1080344","FO_HDV247_V1","GCA_000260075.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. radicis-cucumerinum (GCA_001702695)","Hypocreales","327505","ASM170269v2","GCA_001702695.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. radicis-lycopersici 26381 str. 26381 (CL57) (GCA_000260155)","Hypocreales","1089448","FO_CL57_V1","GCA_000260155.3","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. raphani 54005 (GCA_000260235)","Hypocreales","1089458","FO_PHW815_V1","GCA_000260235.2","","-","-","-","-","-" +"","Fusarium oxysporum f. sp. vasinfectum 25433 str. 25433 (Cotton) (GCA_000260175)","Hypocreales","1089449","FO_Cotton_V1","GCA_000260175.2","","-","-","-","-","-" +"","Fusarium poae (GCA_001675295)","Hypocreales","36050","FPOA1.0","GCA_001675295.1","","-","-","-","-","-" +"","Fusarium proliferatum (GCA_900029915)","Hypocreales","948311","F._proliferatum_NRRL62905_version_1","GCA_900029915.1","","-","-","-","-","-" +"","Fusarium proliferatum ET1 (GCA_900067095)","Hypocreales","1227346","F._proliferatum_ET1_version_1","GCA_900067095.1","","-","-","-","-","-" +"","Fusarium pseudograminearum","Hypocreales","1028729","GCA_000303195.1","GCA_000303195.1","","-","-","","","-" +"","Fusarium solani","Hypocreales","660122","v2.0","GCA_000151355.1","","-","","","","-" +"","Fusarium venenatum (GCA_900007375)","Hypocreales","56646","ASM90000737v1","GCA_900007375.1","","-","-","-","-","-" +"","Fusarium verticillioides","Hypocreales","334819","ASM14955v1","GCA_000149555.1","","-","","","","-" +"","Gaeumannomyces tritici R3-111a-1","Magnaporthales","644352","Gae_graminis_V2","GCA_000145635.1","","-","-","-","","-" +"","Galerina marginata CBS 339.88 (GCA_000697645)","Agaricales","685588","Galma1","GCA_000697645.1","","-","-","-","","-" +"","Ganoderma sinense ZZ0214-1 (GCA_002760635)","Polyporales","1077348","GanSi1.6","GCA_002760635.1","","-","-","-","","-" +"","Gelatoporia subvermispora B (GCA_000320605)","Polyporales","914234","Ceriporiopsis_subvermispora_B_v1.0","GCA_000320605.2","","-","-","-","","-" +"","Glarea lozoyensis ATCC 20868 str. 1224 (GCA_000409485)","Helotiales","1116229","GLAREA","GCA_000409485.1","","-","-","-","","-" +"","Gloeophyllum trabeum ATCC 11539 (GCA_000344685)","Gloeophyllales","670483","Glotr1_1","GCA_000344685.1","","-","-","-","","-" +"","Gonapodya prolifera JEL478 (GCA_001574975)","","1344416","Ganpr1","GCA_001574975.1","","-","-","-","","-" +"","Grifola frondosa str. 9006-11 (GCA_001683735)","Agaricales","5627","ASM168373v1","GCA_001683735.1","","-","-","-","","-" +"","Grosmannia clavigera kw1407 (GCA_000143105)","Ophiostomatales","655863","Sanger-454-IlluminaPA_2.0","GCA_000143105.2","","-","-","-","","-" +"","Gymnopus luxurians FD-317 M1 (GCA_000827265)","Agaricales","944289","Gymlu1","GCA_000827265.1","","-","-","-","","-" +"","Hanseniaspora guilliermondii (GCA_900119595)","Saccharomycetales","56406","version_1","GCA_900119595.1","","-","-","-","","-" +"","Hanseniaspora opuntiae (GCA_001749795)","Saccharomycetales","211096","ASM174979v1","GCA_001749795.1","","-","-","-","","-" +"","Hanseniaspora osmophila (GCA_001747045)","Saccharomycetales","56408","ASM174704v1","GCA_001747045.1","","-","-","-","","-" +"","Hanseniaspora uvarum (GCA_001747055)","Saccharomycetales","29833","ASM174705v1","GCA_001747055.1","","-","-","-","-","-" +"","Hanseniaspora uvarum DSM 2768 (GCA_000968475)","Saccharomycetales","1246595","Huva2.0","GCA_000968475.1","","-","-","-","","-" +"","Hanseniaspora valbyensis NRRL Y-1626 (GCA_001664025)","Saccharomycetales","766949","Hanva1_1","GCA_001664025.1","","-","-","-","","-" +"","Hebeloma cylindrosporum h7 (GCA_000827355)","Agaricales","686832","Hebeloma_cylindrosporum_h7_v2.0","GCA_000827355.1","","-","-","-","","-" +"","Helicocarpus griseus UAMH5409 (GCA_002573585)","Onygenales","1447875","Heli_gris_5409_V1","GCA_002573585.1","","-","-","-","","-" +"","Hepatospora eriocheir str. GB1 (GCA_002087885)","Microsporidia","1081669","ASM208788v1","GCA_002087885.1","","-","-","-","-","-" +"","Hepatospora eriocheir str. canceri (GCA_002087875)","Microsporidia","1081669","ASM208787v1","GCA_002087875.1","","-","-","-","","-" +"","Hesseltinella vesiculosa str. NRRL 3301","Mucoromycotina","101127","Hesve2","GCA_002104935.1","","-","-","-","","-" +"","Heterobasidion irregulare TC 32-1 (GCA_000320585)","Russulales","747525","Heterobasidion_irregulare_v2.0","GCA_000320585.2","","-","-","-","","-" +"","Hirsutella minnesotensis 3608 (GCA_000956045)","Hypocreales","1043627","ASM95604v1","GCA_000956045.1","","-","-","-","","-" +"","Histoplasma capsulatum G186AR (GCA_000150115)","Onygenales","447093","ASM15011v1","GCA_000150115.1","","-","-","-","-","-" +"","Histoplasma capsulatum H143 (GCA_000151035)","Onygenales","544712","ASM15103v1","GCA_000151035.1","","-","-","-","-","-" +"","Histoplasma capsulatum H88 (GCA_000151005)","Onygenales","544711","ASM15100v2","GCA_000151005.2","","-","-","-","-","-" +"","Histoplasma capsulatum NAm1 (GCA_000149585)","Onygenales","339724","ASM14958v1","GCA_000149585.1","","-","-","-","","-" +"","Hortaea werneckii EXF-2000 (GCA_002127715)","Dothideales","1157616","HwerPB1","GCA_002127715.1","","-","-","-","","-" +"","Hydnomerulius pinastri MD-312 (GCA_000827185)","Boletales","994086","Hydpi2","GCA_000827185.1","","-","-","-","","-" +"","Hypholoma sublateritium FD-334 SS-4 (GCA_000827495)","Agaricales","945553","Hypsu1","GCA_000827495.1","","-","-","-","","-" +"","Hyphopichia burtonii NRRL Y-1933 (GCA_001661395)","Saccharomycetales","984485","Hypbu1","GCA_001661395.1","","-","-","-","","-" +"","Hypoxylon sp. CI-4A (GCA_002120315)","Xylariales","1001833","HypCI4A_v1.0","GCA_002120315.1","","-","-","-","","-" +"","Hypoxylon sp. CO27-5 (GCA_002120305)","Xylariales","1001938","HypCO275_v1.0","GCA_002120305.1","","-","-","-","-","-" +"","Hypoxylon sp. EC38 (GCA_002120335)","Xylariales","1001937","HypEC38_v3.0","GCA_002120335.1","","-","-","-","-","-" +"","Hypsizygus marmoreus str. 51987-8 (GCA_001605315)","Agaricales","39966","ASM160531v1","GCA_001605315.1","","-","-","-","","-" +"","Jaapia argillacea MUCL 33604 (GCA_000697665)","Jaapiales","933084","Jaaar1","GCA_000697665.1","","-","-","-","","-" +"","Jaminaea rosea str. MCA 5214 (GCA_003144245)","","1569628","Jamsp1","GCA_003144245.1","","-","-","-","","-" +"","Kalmanozyma brasiliensis GHG001 (GCA_000497045)","Ustilaginales","1365824","PSEUBRA1","GCA_000497045.1","","-","-","-","","-" +"","Kazachstania africana CBS 2517 (GCA_000304475)","Saccharomycetales","1071382","Ka_CBS2517","GCA_000304475.1","","-","-","-","","-" +"","Kazachstania naganishii CBS 8797 (GCA_000348985)","Saccharomycetales","1071383","ASM34898v1","GCA_000348985.1","","-","-","-","","-" +"","Kluyveromyces dobzhanskii CBS 2104 str. CBS2104 (GCA_000820885)","Saccharomycetales","1427455","KLDO_01","GCA_000820885.1","","-","-","-","","-" +"","Kluyveromyces lactis str. NRRL Y-1140 (GCA_000002515)","Saccharomycetales","28985","ASM251v1","GCA_000002515.1","","-","-","-","","-" +"","Kluyveromyces marxianus DMKU3-1042 (GCA_001417885)","Saccharomycetales","1003335","Kmar_1.0","GCA_001417885.1","","-","-","-","","-" +"","Kluyveromyces marxianus str. NBRC 1777 (GCA_001417835)","Saccharomycetales","4911","KM1777_03","GCA_001417835.1","","-","-","-","-","-" +"","Kockovaella imperatae str. NRRL Y-17943 (GCA_002102565)","Tremellales","4999","Kocim1","GCA_002102565.1","","-","-","-","","-" +"","Komagataella pastoris","Saccharomycetales","644223","GCA_000027005.1","GCA_000027005.1","","-","-","","","-" +"","Komagataella pastoris (GCA_001708105)","Saccharomycetales","4922","ASM170810v1","GCA_001708105.1","","-","-","-","-","-" +"","Komagataella phaffii CBS 7435 (GCA_000223565)","Saccharomycetales","981350","PicPas_Mar2011","GCA_000223565.1","","-","-","-","-","-" +"","Komagataella phaffii CBS 7435 (GCA_900235035)","Saccharomycetales","981350","ASM90023503v1","GCA_900235035.1","","-","-","-","-","-" +"","Komagataella phaffii GS115 (GCA_001746955)","Saccharomycetales","644223","ASM174695v1","GCA_001746955.1","","-","-","-","","-" +"","Komagataella phaffii str. WT (GCA_001708085)","Saccharomycetales","460519","ASM170808v1","GCA_001708085.1","","-","-","-","-","-" +"","Kuraishia capsulata CBS 1993 (GCA_000576695)","Saccharomycetales","1382522","AUH_PRJEB4427_v1","GCA_000576695.1","","-","-","-","","-" +"","Kwoniella bestiolae CBS 10118 (GCA_000512585)","Tremellales","1296100","Cryp_best_CBS10118_V1","GCA_000512585.2","","-","-","-","","-" +"","Kwoniella dejecticola CBS 10117 (GCA_000512565)","Tremellales","1296121","Cryp_deje_CBS10117_V1","GCA_000512565.2","","-","-","-","","-" +"","Kwoniella heveanensis BCC8398 (GCA_000507405)","Tremellales","1296120","Cryp_heve_BCC8398_V1","GCA_000507405.3","","-","-","-","-","-" +"","Kwoniella heveanensis CBS 569 (GCA_000507425)","Tremellales","1296119","Cryp_heve_CBS569_V2","GCA_000507425.3","","-","-","-","-","-" +"","Kwoniella mangroviensis CBS 10435 (GCA_000507885)","Tremellales","1331196","Kwon_mang_CBS10435_V2","GCA_000507885.2","","-","-","-","-","-" +"","Kwoniella mangroviensis CBS 8507 (GCA_000507465)","Tremellales","1296122","Kwon_mang_CBS8507_V2","GCA_000507465.3","","-","-","-","-","-" +"","Kwoniella mangroviensis CBS 8886 (GCA_000507485)","Tremellales","1296123","Kwon_mang_CBS8886_V1","GCA_000507485.3","","-","-","-","-","-" +"","Kwoniella pini CBS 10737 (GCA_000512605)","Tremellales","1296096","Cryp_pinu_CBS10737_V1","GCA_000512605.2","","-","-","-","","-" +"","Laccaria amethystina LaAM-08-1 (GCA_000827195)","Agaricales","1095629","Laccaria_amethystina_LaAM-08-1_v1.0","GCA_000827195.1","","-","-","-","","-" +"","Laccaria bicolor S238N-H82 (GCA_000143565)","Agaricales","486041","V1.0","GCA_000143565.1","","-","-","-","","-" +"","Lachancea dasiensis CBS 10888 (GCA_900074725)","Saccharomycetales","1266660","LADA0","GCA_900074725.1","","-","-","-","","-" +"","Lachancea fermentati (GCA_900074765)","Saccharomycetales","4955","LAFE0","GCA_900074765.1","","-","-","-","-","-" +"","Lachancea lanzarotensis str. CBS 12615 (GCA_000938715)","Saccharomycetales","1245769","LALA0","GCA_000938715.1","","-","-","-","","-" +"","Lachancea meyersii CBS 8951 (GCA_900074715)","Saccharomycetales","1266667","LAME0","GCA_900074715.1","","-","-","-","-","-" +"","Lachancea mirantina (GCA_900074745)","Saccharomycetales","1230905","LAMI0","GCA_900074745.1","","-","-","-","-","-" +"","Lachancea nothofagi CBS 11611 (GCA_900074755)","Saccharomycetales","1266666","LANO0","GCA_900074755.1","","-","-","-","-","-" +"","Lachancea quebecensis (GCA_002900925)","Saccharomycetales","1654605","ASM290092v1","GCA_002900925.1","","-","-","-","-","-" +"","Lachancea sp. CBS 6924 (GCA_900074735)","Saccharomycetales","433476","LAFA0","GCA_900074735.1","","-","-","-","-","-" +"","Lachancea thermotolerans CBS 6340 (GCA_000142805)","Saccharomycetales","559295","ASM14280v1","GCA_000142805.1","","-","-","-","-","-" +"","Laetiporus sulphureus 93-53 (GCA_001632365)","Polyporales","1314785","Laesu1","GCA_001632365.1","","-","-","-","","-" +"","Lentinula edodes str. G408PP-4 (GCA_002003045)","Agaricales","5353","Lened_assembly01","GCA_002003045.1","","-","-","-","","-" +"","Leptosphaeria maculans","Pleosporales","985895","ASM23037v1","GCA_000230375.1","","-","-","","","-" +"","Leucoagaricus sp. SymC.cos (GCA_001563735)","Agaricales","1714833","ASM156373v1","GCA_001563735.1","","-","-","-","","-" +"","Leucosporidium creatinivorum str. 62-1032 (GCA_002105055)","","106004","Leucr1","GCA_002105055.1","","-","-","-","","-" +"","Lichtheimia corymbifera JMRC:FSU:9682 (GCA_000723665)","Mucoromycotina","1263082","454Minimus","GCA_000723665.1","","-","-","-","","-" +"","Lichtheimia ramosa str. JMRC:FSU:6197 (GCA_000945115)","Mucoromycotina","688394","Lramosa_hybrid_454_Illumina","GCA_000945115.1","","-","-","-","","-" +"","Lipomyces starkeyi NRRL Y-11557 (GCA_001661325)","Saccharomycetales","675824","Lipst1_1","GCA_001661325.1","","-","-","-","","-" +"","Lobosporangium transversale str. NRRL 3116","Mortierellomycotina","64571","Lobtra1","GCA_002105155.1","","-","-","-","","-" +"","Lodderomyces elongisporus NRRL YB-4239 (GCA_000149685)","Saccharomycetales","379508","ASM14968v1","GCA_000149685.1","","-","-","-","","-" +"","Lomentospora prolificans str. JHH-5317 (GCA_002276285)","Microascales","41688","Lprolificans_pilon","GCA_002276285.1","","-","-","-","","-" +"","Macrophomina phaseolina MS6 (GCA_000302655)","Botryosphaeriales","1126212","MphMS6_1.0","GCA_000302655.1","","-","-","-","","-" +"","Madurella mycetomatis str. mm55 (GCA_001275765)","Sordariales","100816","ASM127576v2","GCA_001275765.2","","-","-","-","","-" +"","Magnaporthe oryzae","Magnaporthales","242507","MG8","GCA_000002495.2","","-","","","","-" +"","Magnaporthe poae","Magnaporthales","644358","Mag_poae_ATCC_64411_V1","GCA_000193285.1","","-","","","","-" +"","Malassezia globosa CBS 7966 (GCA_000181695)","Malasseziales","425265","ASM18169v1","GCA_000181695.1","","-","-","-","","-" +"","Malassezia pachydermatis (GCA_001278385)","Malasseziales","77020","MalaPachy","GCA_001278385.1","","-","-","-","","-" +"","Malassezia sympodialis ATCC 42132 (GCA_000349305)","Malasseziales","1230383","ASM34930v2","GCA_000349305.2","","-","-","-","","-" +"","Malassezia sympodialis ATCC 42132 (GCA_900149145)","Malasseziales","1230383","Msy_ATCC_42132_Feb2016","GCA_900149145.1","","-","-","-","-","-" +"","Malassezia vespertilionis str. NWHC:44797-103 (GCA_002818225)","Malasseziales","2020962","ASM281822v1","GCA_002818225.1","","-","-","-","","-" +"","Marssonina brunnea f. sp. 'multigermtubi' MB_m1 (GCA_000298775)","Helotiales","1072389","ASM29877v1","GCA_000298775.1","","-","-","-","","-" +"","Meira miltonrushii str. MCA 3882 (GCA_003144205)","","1280837","Meimi1","GCA_003144205.1","","-","-","-","","-" +"","Melampsora larici-populina","Pucciniales","747676","GCA_000204055.1","GCA_000204055.1","","-","-","","","-" +"","Meliniomyces bicolor E (GCA_002865645)","Helotiales","1095630","Melbi2","GCA_002865645.1","","-","-","-","","-" +"","Meliniomyces variabilis F (GCA_002865655)","Helotiales","1149755","Melva1","GCA_002865655.1","","-","-","-","","-" +"","Metarhizium acridum CQMa 102 (GCA_000187405)","Hypocreales","655827","MetAcr_May2010","GCA_000187405.1","","-","-","-","","-" +"","Metarhizium album ARSEF 1941 (GCA_000804445)","Hypocreales","1081103","MAM_1.0_for_version_1_of_the_Metarhizium_album_genome","GCA_000804445.1","","-","-","-","","-" +"","Metarhizium anisopliae ARSEF 549 (GCA_000814975)","Hypocreales","1276135","MAN_1.0","GCA_000814975.1","","-","-","-","-","-" +"","Metarhizium anisopliae BRIP 53284 (GCA_000426985)","Hypocreales","1291519","ASM42698v1","GCA_000426985.1","","-","-","-","-","-" +"","Metarhizium anisopliae BRIP 53293 (GCA_000426965)","Hypocreales","1291518","ASM42696v1","GCA_000426965.1","","-","-","-","-","-" +"","Metarhizium anisopliae str. E6 (GCA_000739145)","Hypocreales","5530","Metarhizium_anisopliae","GCA_000739145.1","","-","-","-","-","-" +"","Metarhizium brunneum ARSEF 3297 (GCA_000814965)","Hypocreales","1276141","MBR_1.0","GCA_000814965.1","","-","-","-","-","-" +"","Metarhizium guizhouense ARSEF 977 (GCA_000814955)","Hypocreales","1276136","MGU_1.0","GCA_000814955.1","","-","-","-","-","-" +"","Metarhizium majus ARSEF 297 (GCA_000814945)","Hypocreales","1276143","MAJ_1.0","GCA_000814945.1","","-","-","-","","-" +"","Metarhizium rileyi RCEF 4871 (GCA_001636745)","Hypocreales","1081105","NOR_1.0","GCA_001636745.1","","-","-","-","","-" +"","Metarhizium robertsii (GCA_000591435)","Hypocreales","568076","MR2010_11_27","GCA_000591435.1","","-","-","-","-","-" +"","Metarhizium robertsii ARSEF 23 (GCA_000187425)","Hypocreales","655844","MAA_2.0","GCA_000187425.2","","-","-","-","","-" +"","Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 (GCA_001664035)","Saccharomycetales","869754","Metbi1","GCA_001664035.1","","-","-","-","","-" +"","Meyerozyma guilliermondii ATCC 6260 (GCA_000149425)","Saccharomycetales","294746","ASM14942v1","GCA_000149425.1","","-","-","-","","-" +"","Microbotryum intermedium (GCA_900096595)","Microbotryales","269621","Microbotrium_Intermedium_Assembly","GCA_900096595.1","","-","-","-","","-" +"","Microbotryum violaceum","Microbotryales","683840","GCA_000166175.1","GCA_000166175.1","","-","-","","","-" +"","Microdochium bolleyi str. J235TASD1 (GCA_001566295)","Xylariales","196109","Microdochium_bolleyi_v1.0","GCA_001566295.1","","-","-","-","","-" +"","Microsporum canis CBS 113480 (GCA_000151145)","Onygenales","554155","ASM15114v1","GCA_000151145.1","","-","-","-","","-" +"","Millerozyma farinosa CBS 7064 (GCA_000315895)","Saccharomycetales","559304","ASM31589v1","GCA_000315895.1","","-","-","-","","-" +"","Mitosporidium daphniae str. UGP3 (GCA_000760515)","Microsporidia","1485682","UGP1.0","GCA_000760515.1","","-","-","-","","-" +"","Mixia osmundae IAM 14324 (GCA_000241205)","Mixiales","764103","Mosmundae_2.0","GCA_000241205.2","","-","-","-","","-" +"","Mixia osmundae IAM 14324 (GCA_000708205)","Mixiales","764103","Mixia_osmundae_v1.0","GCA_000708205.1","","-","-","-","-","-" +"","Moelleriella libera RCEF 2490 (GCA_001636675)","Hypocreales","1081109","AAL_1.0","GCA_001636675.1","","-","-","-","","-" +"","Moesziomyces antarcticus T-34 (GCA_000334475)","Ustilaginales","1151754","Pant_1.0","GCA_000334475.1","","-","-","-","","-" +"","Moesziomyces antarcticus str. JCM 10317 (GCA_000747765)","Ustilaginales","84753","ASM74776v1","GCA_000747765.1","","-","-","-","-","-" +"","Moesziomyces aphidis DSM 70725 (GCA_000517465)","Ustilaginales","1391700","PseuAph1.0","GCA_000517465.1","","-","-","-","","-" +"","Moniliophthora perniciosa FA553 (GCA_000183025)","Agaricales","554373","ASM18302v1","GCA_000183025.1","","-","-","-","","-" +"","Moniliophthora roreri MCA 2997 (GCA_000488995)","Agaricales","1381753","M_roreri_MCA_2997_v1","GCA_000488995.1","","-","-","-","","-" +"","Moniliophthora roreri str. MCA 2952 (GCA_001466705)","Agaricales","221103","ASM146670v1","GCA_001466705.1","","-","-","-","-","-" +"","Mortierella elongata AG-77","Mortierellomycotina","1314771","Mortierella_elongata_AG-77_v2.0","GCA_001651415.1","","-","-","-","","-" +"","Mortierella verticillata NRRL 6337 (GCA_000739165)","Mortierellomycotina","1069443","Mort_vert_NRRL_6337_V1","GCA_000739165.1","","-","-","-","","-" +"","Mucor ambiguus str. NBRC 6742 (GCA_000950595)","Mucoromycotina","91626","ASM95059v1","GCA_000950595.1","","-","-","-","","-" +"","Mucor circinelloides f. circinelloides 1006PhL (GCA_000401635)","Mucoromycotina","1220926","Muco_sp_1006Ph_V1","GCA_000401635.1","","-","-","-","","-" +"","Mucor circinelloides f. lusitanicus CBS 277.49","Mucoromycotina","747725","Mucci2","GCA_001638945.1","","-","-","-","-","-" +"","Mycosphaerella eumusae str. CBS 114824 (GCA_001578235)","Capnodiales","321146","ASM157823v1","GCA_001578235.1","","-","-","-","","-" +"","Nadsonia fulvescens var. elongata DSM 6958 (GCA_001661315)","Saccharomycetales","857566","Nadfu1","GCA_001661315.1","","-","-","-","","-" +"","Naematelia encephala str. 68-887.2 (GCA_002105065)","Tremellales","71784","Treen1","GCA_002105065.1","","-","-","-","","-" +"","Nannizzia gypsea CBS 118893 (GCA_000150975)","Onygenales","535722","MS_CBS118893","GCA_000150975.2","","-","-","-","","-" +"","Naumovozyma castellii CBS 4309 (GCA_000237345)","Saccharomycetales","1064592","ASM23734v1","GCA_000237345.1","","-","-","-","","-" +"","Naumovozyma dairenensis CBS 421 (GCA_000227115)","Saccharomycetales","1071378","ASM22711v2","GCA_000227115.2","","-","-","-","","-" +"","Nematocida displodere str. JUm2807 (GCA_001642395)","Microsporidia","1805483","ASM164239v1","GCA_001642395.1","","-","-","-","","-" +"","Nematocida parisii ERTm1 (GCA_000250985)","Microsporidia","881290","Nema_parisii_ERTm1_V3","GCA_000250985.1","","-","-","-","-","-" +"","Nematocida parisii ERTm3 (GCA_000190615)","Microsporidia","935791","Nema_parisii_ERTm3_V1","GCA_000190615.1","","-","-","-","","-" +"","Nematocida sp. 1 ERTm2 (GCA_000250695)","Microsporidia","944018","Nema_parisii_ERTm2_V1","GCA_000250695.1","","-","-","-","","-" +"","Nematocida sp. 1 ERTm6 (GCA_000738915)","Microsporidia","1138374","Nema_sp_1_ERTm6_V2","GCA_000738915.1","","-","-","-","-","-" +"","Nematocida sp. ERTm5 (GCA_001642415)","Microsporidia","1805481","ASM164241v1","GCA_001642415.1","","-","-","-","-","-" +"","Neocallimastix californiae str. G1 (GCA_002104975)","","1754190","Neocallimastix_sp._G1_v1.0","GCA_002104975.1","","-","-","-","","-" +"","Neofusicoccum parvum UCRNP2 (GCA_000385595)","Botryosphaeriales","1287680","UCRNP2V3","GCA_000385595.1","","-","-","-","","-" +"","Neolecta irregularis DAH-3 (GCA_001929475)","Taphrinomycotina","1198029","NeoIirr1.0","GCA_001929475.1","","-","-","-","","-" +"","Neolentinus lepideus HHB14362 ss-1 (GCA_001632425)","Gloeophyllales","1314782","Neole1","GCA_001632425.1","","-","-","-","","-" +"","Neonectria ditissima str. R09/05 (GCA_001306435)","Hypocreales","78410","R0905_v2.0","GCA_001306435.1","","-","-","-","","-" +"","Neurospora crassa","Sordariales","367110","NC12","GCA_000182925.2","","-","-","","","" +"","Neurospora crassa str. 73 (GCA_000786625)","Sordariales","5141","Neucr_trp3_1","GCA_000786625.1","","-","-","-","-","-" +"","Neurospora tetrasperma FGSC 2508 (GCA_000213175)","Sordariales","510951","v2.0","GCA_000213175.1","","-","-","-","-","-" +"","Neurospora tetrasperma FGSC 2509 str. FGSC 2509 mat a (GCA_000213195)","Sordariales","510952","v1.0","GCA_000213195.1","","-","-","-","","-" +"","Nosema apis BRL 01 (GCA_000447185)","Nosematidae","1037528","NapisBRLv01","GCA_000447185.1","","-","-","-","","-" +"","Nosema bombycis CQ1 (GCA_000383075)","Nosematidae","578461","NosBomCQ1_v1.0","GCA_000383075.1","","-","-","-","","-" +"","Nosema ceranae (GCA_000988165)","Nosematidae","40302","ASM98816v1","GCA_000988165.1","","-","-","-","-","-" +"","Nosema ceranae BRL01 (GCA_000182985)","Nosematidae","578460","ASM18298v1","GCA_000182985.1","","-","-","-","","-" +"","Ogataea parapolymorpha DL-1 (GCA_000187245)","Saccharomycetales","871575","Hansenula_2","GCA_000187245.3","","-","-","-","","-" +"","Ogataea polymorpha str. NCYC 495 leu1.1 (GCA_001664045)","Saccharomycetales","460523","Hanpo2","GCA_001664045.1","","-","-","-","","-" +"","Oidiodendron maius Zn (GCA_000827325)","Myxotrichaceae","913774","Oidiodendron_maius_Zn_v1.0","GCA_000827325.1","","-","-","-","","-" +"","Ophiocordyceps australis (GCA_002591405)","Hypocreales","1399860","OphauG2","GCA_002591405.1","","-","-","-","","-" +"","Ophiocordyceps australis (GCA_002591415)","Hypocreales","1399860","OphauB2","GCA_002591415.1","","-","-","-","-","-" +"","Ophiocordyceps camponoti-rufipedis (GCA_002591395)","Hypocreales","2004952","Ophun1","GCA_002591395.1","","-","-","-","","-" +"","Ophiocordyceps sinensis CO18 (GCA_000448365)","Hypocreales","911162","ASM44836v1","GCA_000448365.1","","-","-","-","-","-" +"","Ophiocordyceps unilateralis str. SC16a (GCA_001272575)","Hypocreales","268505","ASM127257v2","GCA_001272575.2","","-","-","-","-","-" +"","Ophiostoma piceae UAMH 11346 str. UAMH-11346 (GCA_000410735)","Ophiostomatales","1262450","Opiceae_UAMHv01","GCA_000410735.1","","-","-","-","","-" +"","Ordospora colligata OC4 (GCA_000803265)","Ordosporidae","1354746","ASM80326v1","GCA_000803265.1","","-","-","-","","-" +"","Pachysolen tannophilus NRRL Y-2460 (GCA_001661245)","Saccharomycetales","669874","Pacta1_2","GCA_001661245.1","","-","-","-","","-" +"","Paracoccidioides brasiliensis Pb03 (GCA_000150475)","Onygenales","482561","Paracocci_br_Pb03_V2","GCA_000150475.2","","-","-","-","-","-" +"","Paracoccidioides brasiliensis Pb18 (GCA_000150735)","Onygenales","502780","Paracocci_br_Pb18_V2","GCA_000150735.2","","-","-","-","","-" +"","Paracoccidioides brasiliensis str. CNH (GCA_001713695)","Onygenales","121759","Paracocci_br_PbCNH","GCA_001713695.1","","-","-","-","-","-" +"","Paracoccidioides brasiliensis str. Pb300 (GCA_001713645)","Onygenales","121759","ASM171364v1","GCA_001713645.1","","-","-","-","-","-" +"","Paracoccidioides lutzii Pb01 (GCA_000150705)","Onygenales","502779","Paracocci_br_Pb01_V2","GCA_000150705.2","","-","-","-","","-" +"","Paramicrosporidium saccamoebae str. KSL3 (GCA_002794465)","Cryptomycota","1246581","KSL3_v6","GCA_002794465.1","","-","-","-","","-" +"","Paraphaeosphaeria sporulosa str. AP3s5-JAC2a (GCA_001642045)","Pleosporales","1460663","Parsp1","GCA_001642045.1","","-","-","-","","-" +"","Paxillus involutus ATCC 200175 (GCA_000827475)","Boletales","664439","Paxillus_involutus_ATCC_200175_v1.0","GCA_000827475.1","","-","-","-","","-" +"","Paxillus rubicundulus Ve08.2h10 (GCA_000827395)","Boletales","930991","Paxillus_rubicundulus_Ve08.2h10_v1.0","GCA_000827395.1","","-","-","-","","-" +"","Penicilliopsis zonata CBS 506.65 (GCA_001890105)","Eurotiales","1073090","Aspzo1","GCA_001890105.1","","-","-","-","","-" +"","Penicillium antarcticum (GCA_002072345)","Eurotiales","416450","ASM207234v1","GCA_002072345.1","","-","-","-","","-" +"","Penicillium arizonense (GCA_001773325)","Eurotiales","1835702","ASM177332v1","GCA_001773325.1","","-","-","-","-","-" +"","Penicillium brasilianum str. LaBioMMi 136 (GCA_002016555)","Eurotiales","104259","ASM201655v1","GCA_002016555.1","","-","-","-","-","-" +"","Penicillium brasilianum str. MG11 (GCA_001048715)","Eurotiales","104259","Pbras_Allpaths-LG","GCA_001048715.1","","-","-","-","","-" +"","Penicillium camemberti FM 013 (GCA_000513335)","Eurotiales","1429867","PCAMFM013_20131106","GCA_000513335.1","","-","-","-","","-" +"","Penicillium chrysogenum str. P2niaD18 (GCA_000710275)","Eurotiales","5076","ASM71027v1","GCA_000710275.1","","-","-","-","-","-" +"","Penicillium coprophilum (GCA_002072405)","Eurotiales","36646","ASM207240v1","GCA_002072405.1","","-","-","-","-","-" +"","Penicillium decumbens (GCA_002072245)","Eurotiales","69771","ASM207224v1","GCA_002072245.1","","-","-","-","-","-" +"","Penicillium digitatum PHI26 (GCA_000315665)","Eurotiales","1170229","PdigPHI26_v1","GCA_000315665.1","","-","-","-","-","-" +"","Penicillium digitatum Pd1 (GCA_000315645)","Eurotiales","1170230","PdigPd1_v1","GCA_000315645.2","","-","-","-","-","-" +"","Penicillium expansum str. CMP-1 (GCA_000769755)","Eurotiales","27334","PEX1","GCA_000769755.1","","-","-","-","-","-" +"","Penicillium expansum str. MD-8 (GCA_000769745)","Eurotiales","27334","ASM76974v1","GCA_000769745.1","","-","-","-","-","-" +"","Penicillium expansum str. d1 (GCA_000769735)","Eurotiales","27334","ASM76973v1","GCA_000769735.1","","-","-","-","-","-" +"","Penicillium flavigenum (GCA_002072365)","Eurotiales","254877","ASM207236v1","GCA_002072365.1","","-","-","-","-","-" +"","Penicillium freii (GCA_001513925)","Eurotiales","48697","ASM151392v1","GCA_001513925.1","","-","-","-","-","-" +"","Penicillium griseofulvum str. PG3 (GCA_001561935)","Eurotiales","5078","ASM156193v1","GCA_001561935.1","","-","-","-","-","-" +"","Penicillium italicum str. PHI-1 (GCA_000769765)","Eurotiales","40296","ASM76976v1","GCA_000769765.1","","-","-","-","-","-" +"","Penicillium nalgiovense (GCA_002072425)","Eurotiales","60175","ASM207242v1","GCA_002072425.1","","-","-","-","-","-" +"","Penicillium nordicum (GCA_001278595)","Eurotiales","229535","ASM127859v1","GCA_001278595.1","","-","-","-","-","-" +"","Penicillium occitanis str. CL100 (GCA_002382855)","Eurotiales","290292","ASM238285v1","GCA_002382855.1","","-","-","-","-","-" +"","Penicillium occitanis str. CT1 (GCA_002382835)","Eurotiales","290292","ASM238283v1","GCA_002382835.1","","-","-","-","-","-" +"","Penicillium oxalicum 114-2 (GCA_000346795)","Eurotiales","933388","pde_v1.0","GCA_000346795.1","","-","-","-","-","-" +"","Penicillium polonicum (GCA_002072265)","Eurotiales","60169","ASM207226v1","GCA_002072265.1","","-","-","-","-","-" +"","Penicillium roqueforti FM164 (GCA_000513255)","Eurotiales","1365484","PROQFM164_20130607","GCA_000513255.1","","-","-","-","-","-" +"","Penicillium rubens Wisconsin 54-1255 (GCA_000226395)","Eurotiales","500485","PenChr_Nov2007","GCA_000226395.1","","-","-","-","-","-" +"","Penicillium solitum (GCA_002072235)","Eurotiales","60172","ASM207223v1","GCA_002072235.1","","-","-","-","-","-" +"","Penicillium steckii (GCA_002072375)","Eurotiales","303698","ASM207237v1","GCA_002072375.1","","-","-","-","-","-" +"","Penicillium subrubescens str. CBS 132785 (GCA_001908125)","Eurotiales","1316194","ASM190812v1","GCA_001908125.1","","-","-","-","-","-" +"","Penicillium vulpinum (GCA_002072255)","Eurotiales","29845","ASM207225v1","GCA_002072255.1","","-","-","-","-","-" +"","Peniophora sp. CONT (GCA_001632445)","Russulales","1314672","Ricme1","GCA_001632445.1","","-","-","-","","-" +"","Periconia macrospinosa str. DSE2036 (GCA_003073855)","Pleosporales","97972","Perma1","GCA_003073855.1","","-","-","-","","-" +"","Pestalotiopsis fici W106-1 (GCA_000516985)","Xylariales","1229662","PFICI","GCA_000516985.1","","-","-","-","","-" +"","Pezoloma ericae str. UAMH 7357 (GCA_002865625)","Helotiales","1745343","Rhier1","GCA_002865625.1","","-","-","-","","-" +"","Phaeoacremonium minimum UCRPA7 (GCA_000392275)","Sordariomycetidae","1286976","UCRPA7V03","GCA_000392275.1","","-","-","-","","-" +"","Phaeomoniella chlamydospora (GCA_001006345)","Chaetothyriomycetidae","158046","UCRPA7V1.0","GCA_001006345.1","","-","-","-","","-" +"","Phaeosphaeria nodorum","Pleosporales","321614","ASM14691v1","GCA_000146915.1","","-","-","","","-" +"","Phanerochaete carnosa HHB-10118-sp (GCA_000300595)","Polyporales","650164","Phanerochaete_carnosa_HHB-10118-Sp_v1.0","GCA_000300595.1","","-","-","-","","-" +"","Phellinus noxius (GCA_002287475)","Hymenochaetales","2282107","ASM228747v1","GCA_002287475.1","","-","-","-","","-" +"","Phialocephala scopiformis str. CBS 120377 (GCA_001500285)","Helotiales","149040","Phisc1","GCA_001500285.1","","-","-","-","","-" +"","Phialocephala subalpina (GCA_900073065)","Helotiales","576137","PAC_version_1","GCA_900073065.1","","-","-","-","","-" +"","Phialophora americana str. CBS 27337 (GCA_000835435)","Chaetothyriomycetidae","5601","Capr_semi_CBS27337_V1","GCA_000835435.1","","-","-","-","","-" +"","Phialophora attae str. CBS 131958 (GCA_001299255)","Chaetothyriomycetidae","1664694","ASM129925v1","GCA_001299255.1","","-","-","-","","-" +"","Phlebia centrifuga str. FBCC195 (GCA_001913855)","Polyporales","98765","ASM191385v2","GCA_001913855.2","","-","-","-","","-" +"","Phlebiopsis gigantea 11061_1 CR5-6 (GCA_000832265)","Polyporales","745531","Phlgi1","GCA_000832265.1","","-","-","-","","-" +"","Pichia kudriavzevii str. 129 (GCA_001983325)","Saccharomycetales","4909","ASM198332v1","GCA_001983325.1","","-","-","-","-","-" +"","Pichia kudriavzevii str. CBS573 (GCA_003054445)","Saccharomycetales","4909","ASM305444v1","GCA_003054445.1","","-","-","-","-","-" +"","Pichia kudriavzevii str. Ckrusei653 (GCA_002166775)","Saccharomycetales","4909","Cand_krus_Ckrusei653_V21","GCA_002166775.1","","-","-","-","-","-" +"","Pichia kudriavzevii str. SD108 (GCA_000764455)","Saccharomycetales","4909","ASM76445v1","GCA_000764455.1","","-","-","-","","-" +"","Pichia membranifaciens NRRL Y-2026 (GCA_001661235)","Saccharomycetales","763406","Picme2","GCA_001661235.1","","-","-","-","","-" +"","Pichia membranifaciens str. KS47-1 (GCA_001950575)","Saccharomycetales","4926","P_membrenifaciens-1.0","GCA_001950575.1","","-","-","-","-","-" +"","Piloderma croceum F 1598 (GCA_000827315)","Atheliales","765440","Piloderma_croceum_F_1598_v1.0","GCA_000827315.1","","-","-","-","","-" +"","Piromyces finnis (GCA_002104945)","","1754191","Piromyces_sp._finnis_v3.0","GCA_002104945.1","","-","-","-","","-" +"","Piromyces sp. E2 (GCA_002157105)","","73868","PirspE2_v1.0","GCA_002157105.1","","-","-","-","","-" +"","Pisolithus microcarpus 441 (GCA_000827275)","Boletales","765257","Pisolithus_microcarpus_441_v1.0","GCA_000827275.1","","-","-","-","","-" +"","Pisolithus tinctorius Marx 270 (GCA_000827335)","Boletales","870435","Pisolithus_tinctorius_Marx_270_v1.0","GCA_000827335.1","","-","-","-","","-" +"","Pleurotus ostreatus PC15 (GCA_000697685)","Agaricales","1137138","PleosPC15_2","GCA_000697685.1","","-","-","-","","-" +"","Plicaturopsis crispa FD-325 SS-3 (GCA_000827205)","","944288","Plicr1","GCA_000827205.1","","-","-","-","","-" +"","Pneumocystis carinii B80 (GCA_001477545)","Taphrinomycotina","1408658","Pneu_cari_B80_V3","GCA_001477545.1","","-","-","-","","-" +"","Pneumocystis jirovecii RU7 (GCA_001477535)","Taphrinomycotina","1408657","Pneu_jiro_RU7_V2","GCA_001477535.1","","-","-","-","","-" +"","Pneumocystis murina B123 (GCA_000349005)","Taphrinomycotina","1069680","Pneumo_murina_B123_V4","GCA_000349005.2","","-","-","-","","-" +"","Pochonia chlamydosporia 170 (GCA_001653235)","Hypocreales","1380566","ASM165323v2","GCA_001653235.2","","-","-","-","","-" +"","Podospora anserina S mat+ (GCA_000226545)","Sordariales","515849","ASM22654v1","GCA_000226545.1","","-","-","-","-","-" +"","Polytolypa hystricis UAMH7299 (GCA_002573605)","Onygenales","1447883","Poly_hyst_7299_V1","GCA_002573605.1","","-","-","-","","-" +"","Postia placenta MAD-698-R-SB12 (GCA_002117355)","Polyporales","670580","PosplRSB12_1","GCA_002117355.1","","-","-","-","-","-" +"","Postia placenta Mad-698-R (GCA_000006255)","Polyporales","561896","Postia_placenta_V1.0","GCA_000006255.1","","-","-","-","","-" +"","Protomyces lactucaedebilis str. 12-1054 (GCA_002105105)","Taphrinomycotina","56484","Prola1","GCA_002105105.1","","-","-","-","","-" +"","Pseudocercospora fijiensis CIRAD86 (GCA_000340215)","Capnodiales","383855","Mycfi2","GCA_000340215.1","","-","-","-","","-" +"","Pseudocercospora musae str. CBS 116634 (GCA_001578225)","Capnodiales","113226","ASM157822v1","GCA_001578225.1","","-","-","-","","-" +"","Pseudogymnoascus destructans (GCA_001641265)","Pseudeurotiaceae","655981","ASM164126v1","GCA_001641265.1","","-","-","-","-","-" +"","Pseudogymnoascus destructans 20631-21 (GCA_000184105)","Pseudeurotiaceae","658429","Geom_destructans_V1","GCA_000184105.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. 03VT05 (GCA_001662645)","Pseudeurotiaceae","1622148","ASM166264v1","GCA_001662645.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. 05NY08 (GCA_001662605)","Pseudeurotiaceae","1622149","ASM166260v1","GCA_001662605.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. 23342-1-I1 (GCA_001662575)","Pseudeurotiaceae","1524831","ASM166257v1","GCA_001662575.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. 24MN13 (GCA_001662595)","Pseudeurotiaceae","1622150","ASM166259v1","GCA_001662595.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-103 (GCA_000750895)","Pseudeurotiaceae","1420912","DG30","GCA_000750895.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-3557 (GCA_000750665)","Pseudeurotiaceae","1437433","DG3","GCA_000750665.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-3775 (GCA_000750715)","Pseudeurotiaceae","1420901","DG4","GCA_000750715.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-3808 (GCA_000750675)","Pseudeurotiaceae","1391699","DG1","GCA_000750675.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4246 (GCA_000750735)","Pseudeurotiaceae","1420902","DG5","GCA_000750735.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4281 (FW-2241) (GCA_000750745)","Pseudeurotiaceae","1420906","DG6","GCA_000750745.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4513 (FW-928) (GCA_000750755)","Pseudeurotiaceae","1420907","DG7","GCA_000750755.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4514 (FW-929) (GCA_000750795)","Pseudeurotiaceae","1420908","DG8","GCA_000750795.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4515 (FW-2607) (GCA_000750805)","Pseudeurotiaceae","1420909","DG10","GCA_000750805.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4516 (FW-969) (GCA_000750815)","Pseudeurotiaceae","1420910","DG11","GCA_000750815.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4517 (FW-2822) (GCA_000750875)","Pseudeurotiaceae","1420911","DG13","GCA_000750875.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4518 (FW-2643) (GCA_000750925)","Pseudeurotiaceae","1420913","DG36","GCA_000750925.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4519 (FW-2642) (GCA_000750935)","Pseudeurotiaceae","1420914","DG38","GCA_000750935.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. VKM F-4520 (FW-2644) (GCA_000750995)","Pseudeurotiaceae","1420915","DG39","GCA_000750995.1","","-","-","-","-","-" +"","Pseudogymnoascus sp. WSF 3629 (GCA_001662585)","Pseudeurotiaceae","1622147","ASM166258v1","GCA_001662585.1","","-","-","-","-","-" +"","Pseudogymnoascus verrucosus (GCA_001662655)","Pseudeurotiaceae","342668","ASM166265v1","GCA_001662655.1","","-","-","-","-","-" +"","Pseudoloma neurophilia str. MK1 (GCA_001432165)","Microsporidia","146866","ASM143216v1","GCA_001432165.1","","-","-","-","","-" +"","Pseudomassariella vexata str. CBS 129021 (GCA_002105095)","Xylariales","1141098","Pseve2","GCA_002105095.1","","-","-","-","","-" +"","Pseudomicrostroma glucosiphilum str. MCA 4718 (GCA_003144135)","","1684307","Rhodsp1","GCA_003144135.1","","-","-","-","","-" +"","Pseudozyma hubeiensis SY62 (GCA_000403515)","Ustilaginales","1305764","ASM40351v1","GCA_000403515.1","","-","-","-","","-" +"","Puccinia coronata var. avenae f. sp. avenae (GCA_002873275)","Pucciniales","200324","ASM287327v1","GCA_002873275.1","","-","-","-","","-" +"","Puccinia graminis","Pucciniales","418459","ASM14992v1","GCA_000149925.1","","-","","","","" +"","Puccinia graminis Ug99","Pucciniales","1040990","v1","-","","-","-","","","-" +"","Puccinia sorghi str. RO10H11247 (GCA_001263375)","Pucciniales","27349","ASM126337v1","GCA_001263375.1","","-","-","-","","-" +"","Puccinia striiformis (GCA_002920065)","Pucciniales","27350","ASM292006v1","GCA_002920065.1","","-","-","-","","-" +"","Puccinia striiformis f. sp. tritici PST-130 str. Race 130","Pucciniales","875184","PST-130_1.0","GCA_000223505.1","","-","-","","-","-" +"","Puccinia striiformis f. sp. tritici PST-78 (GCA_001191645)","Pucciniales","1165861","P_striiformis_V1","GCA_001191645.1","","-","-","-","-","-" +"","Puccinia triticina","Pucciniales","630390","ASM15152v1","GCA_000151525.1","","-","","","","-" +"","Punctularia strigosozonata HHB-11173 SS5 (GCA_000264995)","Corticiales","741275","Punctularia_strigosozonata_v1.0","GCA_000264995.1","","-","-","-","","-" +"","Purpureocillium lilacinum (GCA_001653205)","Hypocreales","33203","ASM165320v1","GCA_001653205.1","","-","-","-","","-" +"","Purpureocillium lilacinum (GCA_001653265)","Hypocreales","33203","ASM165326v1","GCA_001653265.1","","-","-","-","-","-" +"","Purpureocillium lilacinum str. 36-1 (GCA_003144605)","Hypocreales","33203","ASM314460v1","GCA_003144605.1","","-","-","-","-","-" +"","Pyrenochaeta sp. DS3sAY3a (GCA_001644535)","Pleosporales","765867","Pyrsp1","GCA_001644535.1","","-","-","-","","-" +"","Pyrenophora teres","Pleosporales","861557","GCA_000166005.1","GCA_000166005.1","","-","-","","","-" +"","Pyrenophora tritici-repentis (GCA_003171545)","Pleosporales","45151","PtrARCrossB10","GCA_003171545.1","","-","-","-","-","-" +"","Pyrenophora tritici-repentis (GCA_003231325)","Pleosporales","45151","Ptr134","GCA_003231325.1","","-","-","-","-","-" +"","Pyrenophora tritici-repentis (GCA_003231365)","Pleosporales","45151","Ptr239","GCA_003231365.1","","-","-","-","-","-" +"","Pyrenophora tritici-repentis (GCA_003231425)","Pleosporales","45151","Ptr86-124","GCA_003231425.1","","-","-","-","-","-" +"","Pyrenophora tritici-repentis Pt-1C-BFP","Pleosporales","426418","ASM14998v1","GCA_000149985.1","","-","-","-","","-" +"","Rachicladosporium antarcticum (GCA_002077065)","Capnodiales","1507870","ASM207706v1","GCA_002077065.1","","-","-","-","","-" +"","Rachicladosporium sp. CCFEE 5018 (GCA_002077045)","Capnodiales","1974281","ASM207704v2","GCA_002077045.2","","-","-","-","","-" +"","Ramularia collo-cygni (GCA_900074925)","Capnodiales","112498","version_1","GCA_900074925.1","","-","-","-","","-" +"","Rasamsonia emersonii CBS 393.64 (GCA_000968595)","Eurotiales","1408163","ASM96859v1","GCA_000968595.1","","-","-","-","","-" +"","Rhinocladiella mackenziei CBS 650.93 (GCA_000835555)","Chaetothyriomycetidae","1442369","Rhin_mack_CBS_650_93_V1","GCA_000835555.1","","-","-","-","","-" +"","Rhizoclosmatium globosum str. JEL800 (GCA_002104985)","Chytridiomycetes","329046","Rhihy1","GCA_002104985.1","","-","-","-","","-" +"","Rhizoctonia solani (GCA_001286725)","Cantharellales","456999","AG22IIIB","GCA_001286725.1","","-","-","-","-","-" +"","Rhizoctonia solani 123E (GCA_000715385)","Cantharellales","1423351","Rhizoctonia_solani_123E_v1","GCA_000715385.1","","-","-","-","-","-" +"","Rhizoctonia solani AG-1 IA str. AG1 IA (GCA_000334115)","Cantharellales","983506","Rhisol_AG1IA_1.0","GCA_000334115.1","","-","-","-","","-" +"","Rhizoctonia solani AG-1 IB (GCA_000350255)","Cantharellales","1108050","ASM35025v1","GCA_000350255.1","","-","-","-","-","-" +"","Rhizoctonia solani AG-3 Rhs1AP (GCA_000524645)","Cantharellales","1086054","Rhizoctonia_solani_AG-3","GCA_000524645.1","","-","-","-","-","-" +"","Rhizoctonia solani AG-8 WAC10335 (GCA_000695385)","Cantharellales","1287689","RSAG8-1.V1","GCA_000695385.1","","-","-","-","-","-" +"","Rhizophagus clarus str. HR1","Glomerales","94130","RclarusHR1_1.0","GCA_003203555.1","","-","-","-","","-" +"","Rhizophagus irregularis DAOM 181602=DAOM 197198","Glomerales","747089","Rir_HGAP_ii_V2","GCA_002897155.1","","-","-","-","-","-" +"","Rhizophagus irregularis DAOM 181602=DAOM 197198 (GCA_000439145)","Glomerales","747089","ASM43914v3","GCA_000439145.3","","-","-","-","-","-" +"","Rhizophagus irregularis DAOM 197198w str. DAOM197198w (GCA_000597685)","Glomerales","1432141","Rir","GCA_000597685.1","","-","-","-","-","-" +"","Rhizophagus irregularis str. A1","Glomerales","588596","ASM159312v1","GCA_001593125.1","","-","-","-","-","-" +"","Rhizophagus irregularis str. A4","Glomerales","588596","ASM159314v1","GCA_001593145.1","","-","-","-","-","-" +"","Rhizophagus irregularis str. A5","Glomerales","588596","ASM159320v1","GCA_001593205.1","","-","-","-","-","-" +"","Rhizophagus irregularis str. C2","Glomerales","588596","ASM159315v1","GCA_001593155.1","","-","-","-","-","-" +"","Rhizopogon vesiculosus str. AM-OR11-056 (GCA_001882365)","Boletales","180088","Rves_AM-OR11-056_1.0","GCA_001882365.1","","-","-","-","","-" +"","Rhizopogon vinicolor AM-OR11-026 (GCA_001658105)","Boletales","1314800","Rhivi1","GCA_001658105.1","","-","-","-","-","-" +"","Rhizopus delemar RA 99-880 (GCA_000149305)","Mucoromycotina","246409","RO3","GCA_000149305.1","","-","-","-","","-" +"","Rhizopus microsporus ATCC 52813","Mucoromycotina","1340429","Rhimi1_1","GCA_002708625.1","","-","-","-","-","-" +"","Rhizopus microsporus str. ATCC 11559","Mucoromycotina","58291","Rhimi_ATCC11559_1","GCA_002083735.1","","-","-","-","-","-" +"","Rhizopus microsporus str. ATCC62417 (GCA_900000135)","Mucoromycotina","58291","RMATCC62417_Allpaths-LG","GCA_900000135.1","","-","-","-","-","-" +"","Rhizopus microsporus str. CBS-344.29 (GCA_000825725)","Mucoromycotina","58291","Rmicro_CBS_344.29_Allpaths-LG","GCA_000825725.1","","-","-","-","","-" +"","Rhizopus microsporus var. microsporus str. ATCC 52814","Mucoromycotina","86635","Rhimi_ATCC52814_1","GCA_002083745.1","","-","-","-","-","-" +"","Rhodotorula graminis WP1 (GCA_001329695)","Sporidiobolales","578459","Rhoba1_1","GCA_001329695.1","","-","-","-","","-" +"","Rhodotorula sp. JG-1b (GCA_001541205)","Sporidiobolales","1305733","Rhosp1","GCA_001541205.1","","-","-","-","-","-" +"","Rhodotorula taiwanensis str. MD1149 (GCA_002922495)","Sporidiobolales","741276","ASM292249v1","GCA_002922495.1","","-","-","-","-","-" +"","Rhodotorula toruloides (GCA_001255795)","Sporidiobolales","5286","IFO0880_HGAP3_v1","GCA_001255795.1","","-","-","-","-","-" +"","Rhodotorula toruloides ATCC 204091 (GCA_000222205)","Sporidiobolales","1001064","R.glutinis2","GCA_000222205.2","","-","-","-","","-" +"","Rhodotorula toruloides NP11 (GCA_000320785)","Sporidiobolales","1130832","RHOziaDV1.0","GCA_000320785.2","","-","-","-","-","-" +"","Rhynchosporium agropyri (GCA_900074905)","Helotiales","914238","version_1","GCA_900074905.1","","-","-","-","","-" +"","Rhynchosporium commune (GCA_900074885)","Helotiales","914237","version_1","GCA_900074885.1","","-","-","-","","-" +"","Rhynchosporium secalis (GCA_900074895)","Helotiales","38038","version_1","GCA_900074895.1","","-","-","-","","-" +"","Rosellinia necatrix str. W97 (GCA_001445595)","Xylariales","77044","Rnecatrix_2.0","GCA_001445595.3","","-","-","-","","-" +"","Rozella allomycis CSF55 (GCA_000442015)","Cryptomycota","988480","Rozella_k41_t100","GCA_000442015.1","","-","-","-","","-" +"","Rutstroemia sp. NJR-2017a BBW (GCA_002946425)","Helotiales","2070414","ASM294642v1","GCA_002946425.1","","-","-","-","","-" +"","Rutstroemia sp. NJR-2017a BVV2 (GCA_002946415)","Helotiales","2070413","ASM294641v1","GCA_002946415.1","","-","-","-","","-" +"","Rutstroemia sp. NJR-2017a WRK4 (GCA_002946385)","Helotiales","2070412","ASM294638v1","GCA_002946385.1","","-","-","-","","-" +"","Saccharomyces arboricola H-6 (GCA_000292725)","Saccharomycetales","1160507","SacArb1.0","GCA_000292725.1","","-","-","-","","-" +"","Saccharomyces cerevisiae","Saccharomycetales","559292","R64-1-1","GCA_000146045.2","","","","","","" +"","Saccharomyces cerevisiae (GCA_001634645)","Saccharomycetales","4932","GLBRCY22-3","GCA_001634645.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae (GCA_002804325)","Saccharomycetales","4932","ASM280432v1","GCA_002804325.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae CEN.PK113-7D (GCA_000269885)","Saccharomycetales","889517","ASM26988v1","GCA_000269885.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae EC1118 (GCA_000218975)","Saccharomycetales","643680","ASM21897v1","GCA_000218975.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae FostersB (GCA_000190255)","Saccharomycetales","764102","ScFostersB_v01","GCA_000190255.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae FostersO (GCA_000326005)","Saccharomycetales","764101","ScFostersO_v01","GCA_000326005.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae Kyokai no. 7 str. kyokai no. 7 (GCA_000260735)","Saccharomycetales","721032","K7_1.0","GCA_000260735.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae Lalvin QA23 (GCA_000325965)","Saccharomycetales","764098","ScQA23_v01","GCA_000325965.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae P283 (GCA_000568295)","Saccharomycetales","1177187","P283","GCA_000568295.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae P301 (GCA_000568055)","Saccharomycetales","1182968","p301","GCA_000568055.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae R103 (GCA_000568365)","Saccharomycetales","1182967","R103","GCA_000568365.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae RM11-1a (GCA_000149365)","Saccharomycetales","285006","ASM14936v1","GCA_000149365.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae VL3 (GCA_000190235)","Saccharomycetales","764100","ScVL3_v01","GCA_000190235.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae Vin13 (GCA_000190215)","Saccharomycetales","764099","ScVIN13_v01","GCA_000190215.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1078 (GCA_000975645)","Saccharomycetales","1296266","Sc_YJM1078_v1","GCA_000975645.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1083 (GCA_000975675)","Saccharomycetales","1292971","Sc_YJM1083_v1","GCA_000975675.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1129 (GCA_000975705)","Saccharomycetales","1293430","Sc_YJM1129_v1","GCA_000975705.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1133 (GCA_000976695)","Saccharomycetales","1294333","Sc_YJM1133_v1","GCA_000976695.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1190 (GCA_000976725)","Saccharomycetales","1294334","Sc_YJM1190_v1","GCA_000976725.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1199 (GCA_000976755)","Saccharomycetales","1294335","Sc_YJM1199_v1","GCA_000976755.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1202 (GCA_000976785)","Saccharomycetales","1294336","Sc_YJM1202_v1","GCA_000976785.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1208 (GCA_000976815)","Saccharomycetales","1294337","Sc_YJM1208_v1","GCA_000976815.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1242 (GCA_000976845)","Saccharomycetales","1294338","Sc_YJM1242_v1","GCA_000976845.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1244 (GCA_000976875)","Saccharomycetales","1294339","Sc_YJM1244_v1","GCA_000976875.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1248 (GCA_000976905)","Saccharomycetales","1294340","Sc_YJM1248_v1","GCA_000976905.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1250 (GCA_000976935)","Saccharomycetales","1294341","Sc_YJM1250_v1","GCA_000976935.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1252 (GCA_000976965)","Saccharomycetales","1294342","Sc_YJM1252_v1","GCA_000976965.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1273 (GCA_000976995)","Saccharomycetales","1294343","Sc_YJM1273_v1","GCA_000976995.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1304 (GCA_000977025)","Saccharomycetales","1294344","Sc_YJM1304_v1","GCA_000977025.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1307 (GCA_000977055)","Saccharomycetales","1294345","Sc_YJM1307_v1","GCA_000977055.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1311 (GCA_000977085)","Saccharomycetales","1294346","Sc_YJM1311_v1","GCA_000977085.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1326 (GCA_000977115)","Saccharomycetales","1294347","Sc_YJM1326_v1","GCA_000977115.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1332 (GCA_000977145)","Saccharomycetales","1294348","Sc_YJM1332_v1","GCA_000977145.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1336 (GCA_000977175)","Saccharomycetales","1294349","Sc_YJM1336_v1","GCA_000977175.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1338 (GCA_000977205)","","1294350","Sc_YJM1338_v1","GCA_000977205.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1341 (GCA_000977235)","Saccharomycetales","1294351","Sc_YJM1341_v1","GCA_000977235.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1342 (GCA_000977265)","Saccharomycetales","1294352","Sc_YJM1342_v1","GCA_000977265.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1355 (GCA_000977295)","Saccharomycetales","1294353","Sc_YJM1355_v1","GCA_000977295.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1356 (GCA_000977325)","Saccharomycetales","1294354","Sc_YJM1356_v1","GCA_000977325.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1381 (GCA_000977355)","Saccharomycetales","1294355","Sc_YJM1381_v1","GCA_000977355.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1383 (GCA_000977385)","Saccharomycetales","1294356","Sc_YJM1383_v1","GCA_000977385.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1385 (GCA_000977415)","Saccharomycetales","1294357","Sc_YJM1385_v1","GCA_000977415.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1386 (GCA_000977445)","Saccharomycetales","1294358","Sc_YJM1386_v1","GCA_000977445.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1387 (GCA_000977475)","Saccharomycetales","1294359","Sc_YJM1387_v1","GCA_000977475.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1388 (GCA_000977505)","Saccharomycetales","1294360","Sc_YJM1388_v1","GCA_000977505.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1389 (GCA_000977535)","Saccharomycetales","1294361","Sc_YJM1389_v1","GCA_000977535.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1399 (GCA_000977565)","Saccharomycetales","1294362","Sc_YJM1399_v1","GCA_000977565.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1400 (GCA_000977595)","Saccharomycetales","1294363","Sc_YJM1400_v1","GCA_000977595.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1401 (GCA_000977625)","Saccharomycetales","1294364","Sc_YJM1401_v1","GCA_000977625.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1402 (GCA_000977655)","Saccharomycetales","1294365","Sc_YJM1402_v1","GCA_000977655.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1415 (GCA_000977685)","Saccharomycetales","1294366","Sc_YJM1415_v1","GCA_000977685.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1417 (GCA_000977715)","Saccharomycetales","1294367","Sc_YJM1417_v1","GCA_000977715.4","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1418 (GCA_000977745)","Saccharomycetales","1294368","Sc_YJM1418_v1","GCA_000977745.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1419 (GCA_000977775)","Saccharomycetales","1294369","Sc_YJM1419_v1","GCA_000977775.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1433 (GCA_000977805)","Saccharomycetales","1294370","Sc_YJM1433_v1","GCA_000977805.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1434 (GCA_000977835)","Saccharomycetales","1294371","Sc_YJM1434_v1","GCA_000977835.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1439 (GCA_000977865)","Saccharomycetales","1294372","Sc_YJM1439_v1","GCA_000977865.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1443 (GCA_000977895)","Saccharomycetales","1294373","Sc_YJM1443_v1","GCA_000977895.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1444 (GCA_000977925)","Saccharomycetales","1294374","Sc_YJM1444_v1","GCA_000977925.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1447 (GCA_000977955)","Saccharomycetales","1294375","Sc_YJM1447_v1","GCA_000977955.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1450 (GCA_000977985)","Saccharomycetales","1294376","Sc_YJM1450_v1","GCA_000977985.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1460 (GCA_000978015)","Saccharomycetales","1294377","Sc_YJM1460_v1","GCA_000978015.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1463 (GCA_000978045)","Saccharomycetales","1294378","Sc_YJM1463_v1","GCA_000978045.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1477 (GCA_000978075)","Saccharomycetales","1294379","Sc_YJM1477_v1","GCA_000978075.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1478 (GCA_000978105)","Saccharomycetales","1294380","Sc_YJM1478_v1","GCA_000978105.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1479 (GCA_000978135)","Saccharomycetales","1294381","Sc_YJM1479_v1","GCA_000978135.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1526 (GCA_000978165)","Saccharomycetales","1294382","Sc_YJM1526_v1","GCA_000978165.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1527 (GCA_000978195)","Saccharomycetales","1294383","Sc_YJM1527_v1","GCA_000978195.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1549 (GCA_000978225)","Saccharomycetales","1294384","Sc_YJM1549_v1","GCA_000978225.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1573 (GCA_000978255)","Saccharomycetales","1294385","Sc_YJM1573_v1","GCA_000978255.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1574 (GCA_000978285)","Saccharomycetales","1294386","Sc_YJM1574_v1","GCA_000978285.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1592 (GCA_000978315)","Saccharomycetales","1294387","Sc_YJM1592_v1","GCA_000978315.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM1615 (GCA_000978345)","Saccharomycetales","1294388","Sc_YJM1615_v1","GCA_000978345.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM189 (GCA_000975735)","Saccharomycetales","1294303","Sc_YJM189_v1","GCA_000975735.4","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM193 (GCA_000975765)","Saccharomycetales","1294304","Sc_YJM193_v1","GCA_000975765.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM195 (GCA_000975585)","Saccharomycetales","1294305","Sc_YJM195_v1","GCA_000975585.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM244 (GCA_000975615)","Saccharomycetales","1294306","Sc_YJM244_v1","GCA_000975615.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM248 (GCA_000975795)","Saccharomycetales","1294307","Sc_YJM248_v1","GCA_000975795.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM270 (GCA_000975825)","Saccharomycetales","1294308","Sc_YJM270_v1","GCA_000975825.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM271 (GCA_000975855)","Saccharomycetales","1294309","Sc_YJM271_v1","GCA_000975855.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM320 (GCA_000975885)","Saccharomycetales","947042","Sc_YJM320_v1","GCA_000975885.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM326 (GCA_000975915)","Saccharomycetales","468558","Sc_YJM326_v1","GCA_000975915.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM428 (GCA_000975945)","Saccharomycetales","947044","Sc_YJM428_v1","GCA_000975945.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM450 (GCA_000975975)","Saccharomycetales","1294310","Sc_YJM450_v1","GCA_000975975.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM451 (GCA_000976005)","Saccharomycetales","502869","Sc_YJM451_v1","GCA_000976005.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM453 (GCA_000976035)","Saccharomycetales","1294311","Sc_YJM453_v1","GCA_000976035.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM456 (GCA_000976065)","Saccharomycetales","1294312","Sc_YJM456_v1","GCA_000976065.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM470 (GCA_000976095)","Saccharomycetales","1294313","Sc_YJM470_v1","GCA_000976095.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM541 (GCA_000976125)","Saccharomycetales","1294314","Sc_YJM541_v1","GCA_000976125.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM554 (GCA_000976155)","Saccharomycetales","1294315","Sc_YJM554_v1","GCA_000976155.4","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM555 (GCA_000976185)","Saccharomycetales","1294316","Sc_YJM555_v1","GCA_000976185.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM627 (GCA_000976215)","Saccharomycetales","1294317","Sc_YJM627_v1","GCA_000976215.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM681 (GCA_000976245)","Saccharomycetales","1294318","Sc_YJM681_v1","GCA_000976245.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM682 (GCA_000976275)","Saccharomycetales","1294319","Sc_YJM682_v1","GCA_000976275.4","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM683 (GCA_000976305)","Saccharomycetales","1294320","Sc_YJM683_v1","GCA_000976305.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM689 (GCA_000976335)","Saccharomycetales","1294321","Sc_YJM689_v1","GCA_000976335.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM693 (GCA_000976365)","Saccharomycetales","1294322","Sc_YJM693_v1","GCA_000976365.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM789 (GCA_000181435)","Saccharomycetales","307796","ASM18143v1","GCA_000181435.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM969 (GCA_000976395)","Saccharomycetales","1294323","Sc_YJM969_v1","GCA_000976395.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM972 (GCA_000976425)","Saccharomycetales","1294324","Sc_YJM972_v1","GCA_000976425.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM975 (GCA_000976455)","Saccharomycetales","1294325","Sc_YJM975_v1","GCA_000976455.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM978 (GCA_000976485)","Saccharomycetales","1294326","Sc_YJM978_v1","GCA_000976485.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM981 (GCA_000976515)","Saccharomycetales","1294327","Sc_YJM981_v1","GCA_000976515.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM984 (GCA_000976545)","Saccharomycetales","1294328","Sc_YJM984_v1","GCA_000976545.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM987 (GCA_000976575)","Saccharomycetales","1294329","Sc_YJM987_v1","GCA_000976575.4","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM990 (GCA_000976605)","Saccharomycetales","1294330","Sc_YJM990_v1","GCA_000976605.3","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM993 (GCA_000662435)","Saccharomycetales","1294331","Sc_YJM993_v1","GCA_000662435.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae YJM996 (GCA_000976665)","Saccharomycetales","1294332","Sc_YJM996_v1","GCA_000976665.2","","-","-","-","-","-" +"","Saccharomyces cerevisiae str. 131 (GCA_001983315)","Saccharomycetales","4932","ASM198331v1","GCA_001983315.1","","-","-","-","-","-" +"","Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 (GCA_000326105)","Saccharomycetales","1095631","ASM32610v1","GCA_000326105.1","","-","-","-","-","-" +"","Saccharomyces eubayanus str. FM1318 (GCA_001298625)","Saccharomycetales","1080349","SEUB3.0","GCA_001298625.1","","-","-","-","","-" +"","Saccharomyces kudriavzevii IFO 1802 (GCA_000167075)","Saccharomycetales","226230","Saccharomyces_kudriavzevii_strain_IFO1802_v1.0","GCA_000167075.2","","-","-","-","","-" +"","Saccharomyces sp. 'boulardii' str. biocodex (GCA_001298375)","Saccharomycetales","252598","ASM129837v2","GCA_001298375.2","","-","-","-","","-" +"","Saccharomyces sp. 'boulardii' str. unique28 (GCA_001413975)","Saccharomycetales","252598","ASM141397v1","GCA_001413975.1","","-","-","-","-","-" +"","Saccharomycetaceae sp. 'Ashbya aceri' (GCA_000412225)","Saccharomycetales","566037","ASM41222v2","GCA_000412225.2","","-","-","-","","-" +"","Saitoella complicata NRRL Y-17804 (GCA_000227095)","Taphrinomycotina","698492","Scomplicata_3.0","GCA_000227095.3","","-","-","-","","-" +"","Saitoella complicata NRRL Y-17804 (GCA_001661265)","Taphrinomycotina","698492","Saico1","GCA_001661265.1","","-","-","-","-","-" +"","Scedosporium apiospermum str. IHEM 14462 (GCA_000732125)","Microascales","563466","ScApio1.0","GCA_000732125.1","","-","-","-","","-" +"","Scheffersomyces stipitis CBS 6054 (GCA_000209165)","Saccharomycetales","322104","ASM20916v1","GCA_000209165.1","","-","-","-","","-" +"","Schizophyllum commune H4-8 (GCA_000143185)","Agaricales","578458","v1.0","GCA_000143185.1","","-","-","-","","-" +"","Schizopora paradoxa str. KUC8140 (GCA_001020605)","Hymenochaetales","27342","Schpa1","GCA_001020605.1","","-","-","-","","-" +"","Schizosaccharomyces cryophilus","Schizosaccharomycetales","653667","GCA_000004155.2","GCA_000004155.2","","-","","","","-" +"","Schizosaccharomyces japonicus","Schizosaccharomycetales","402676","GCA_000149845.2","GCA_000149845.2","","-","","","","-" +"","Schizosaccharomyces octosporus","Schizosaccharomycetales","483514","GCA_000150505.2","GCA_000150505.2","","-","","","","-" +"","Schizosaccharomyces pombe","Schizosaccharomycetales","284812","ASM294v2","GCA_000002945.2","","-","","","","" +"","Scleroderma citrinum Foug A (GCA_000827425)","Boletales","1036808","Scleroderma_citrinum_Foug_A_v1.0","GCA_000827425.1","","-","-","-","","-" +"","Sclerotinia borealis F-4128 (GCA_000503235)","Sclerotiniaceae","1432307","SBOR_1","GCA_000503235.1","","-","-","-","","-" +"","Sclerotinia sclerotiorum","Sclerotiniaceae","665079","ASM14694v1","GCA_000146945.1","","-","-","","","-" +"","Sclerotinia sclerotiorum 1980 UF-70 (GCA_001857865)","Sclerotiniaceae","665079","ASM185786v1","GCA_001857865.1","","-","-","-","-","-" +"","Serendipita indica DSM 11827 (GCA_000313545)","Sebacinales","1109443","ASM31354v1","GCA_000313545.1","","-","-","-","","-" +"","Serendipita vermifera MAFF 305830 (GCA_000827415)","Sebacinales","933852","Sebacina_vermifera_MAFF_305830_v1.0","GCA_000827415.1","","-","-","-","","-" +"","Serpula lacrymans var. lacrymans S7.3 (GCA_000218725)","Boletales","936435","v1.0","GCA_000218725.1","","-","-","-","","-" +"","Serpula lacrymans var. lacrymans S7.9 (GCA_000218685)","Boletales","578457","v1.0","GCA_000218685.1","","-","-","-","-","-" +"","Sistotremastrum niveocremeum HHB9708 (GCA_001630475)","","1314777","Sisni1","GCA_001630475.1","","-","-","-","","-" +"","Sistotremastrum suecicum HHB10207 ss-3 (GCA_001632355)","","1314776","Sissu1","GCA_001632355.1","","-","-","-","","-" +"","Sordaria macrospora k-hell (GCA_000182805)","Sordariales","771870","ASM18280v2","GCA_000182805.2","","-","-","-","","-" +"","Spathaspora passalidarum NRRL Y-27907 (GCA_000223485)","Saccharomycetales","619300","Spathaspora_passalidarum_v2.0","GCA_000223485.1","","-","-","-","","-" +"","Sphaerobolus stellatus SS14 (GCA_000827215)","Geastrales","990650","Sphst1","GCA_000827215.1","","-","-","-","","-" +"","Sphaerulina musiva SO2202 (GCA_000320565)","Capnodiales","692275","Septoria_musiva_SO2202_v1.0","GCA_000320565.2","","-","-","-","","-" +"","Spizellomyces punctatus DAOM BR117 (GCA_000182565)","Chytridiomycetes","645134","S_punctatus_V1","GCA_000182565.2","","-","-","-","","-" +"","Sporisorium reilianum","Ustilaginales","999809","GCA_000230245.1","GCA_000230245.1","","-","-","","","-" +"","Sporisorium reilianum f. sp. reilianum (GCA_900162835)","Ustilaginales","72559","version_2","GCA_900162835.1","","-","-","-","-","-" +"","Sporothrix brasiliensis 5110 (GCA_000820605)","Ophiostomatales","1398154","S_brasiliensis_5110_v1","GCA_000820605.1","","-","-","-","","-" +"","Sporothrix insectorum RCEF 264 (GCA_001636815)","Ophiostomatales","1081102","SPI_1.0","GCA_001636815.1","","-","-","-","","-" +"","Sporothrix schenckii 1099-18 (GCA_000961545)","Ophiostomatales","1397361","S_schenckii_v1","GCA_000961545.1","","-","-","-","-","-" +"","Sporothrix schenckii ATCC 58251 (GCA_000474925)","Ophiostomatales","1391915","Spor_sche_ATCC58251_V1","GCA_000474925.1","","-","-","-","","-" +"","Spraguea lophii 42_110 (GCA_000430065)","Spraguidae","1358809","Sprlop1.0","GCA_000430065.1","","-","-","-","","-" +"","Stachybotrys chartarum IBT 40288 (GCA_000732765)","Hypocreales","1283842","S40288v1","GCA_000732765.1","","-","-","-","","-" +"","Stachybotrys chartarum IBT 40293 (GCA_000732565)","Hypocreales","1280524","S40293v1","GCA_000732565.1","","-","-","-","-","-" +"","Stachybotrys chartarum IBT 7711 (GCA_000730325)","Hypocreales","1280523","S7711v1","GCA_000730325.1","","-","-","-","-","-" +"","Stachybotrys chlorohalonata IBT 40285 (GCA_000732775)","Hypocreales","1283841","S40285v1","GCA_000732775.1","","-","-","-","","-" +"","Stagonospora sp. SRC1lsM3a (GCA_001644525)","Pleosporales","765868","Stasp1","GCA_001644525.1","","-","-","-","","-" +"","Stemphylium lycopersici str. CIDEFI 216 (GCA_001191545)","Pleosporales","183478","ASM119154v1","GCA_001191545.1","","-","-","-","","-" +"","Stereum hirsutum FP-91666 SS1 (GCA_000264905)","Russulales","721885","Stehi1","GCA_000264905.1","","-","-","-","","-" +"","Sugiyamaella lignohabitans str. CBS 10342 (GCA_001640025)","Saccharomycetales","796027","ASM164002v2","GCA_001640025.2","","-","-","-","","-" +"","Suhomyces tanzawaensis NRRL Y-17324 (GCA_001661415)","Saccharomycetales","984487","Canta1","GCA_001661415.1","","-","-","-","","-" +"","Suillus luteus UH-Slu-Lm8-n1 (GCA_000827255)","Boletales","930992","Suilu1","GCA_000827255.1","","-","-","-","","-" +"","Syncephalastrum racemosum str. NRRL 2496","Mucoromycotina","13706","Synrac1","GCA_002105135.1","","-","-","-","","-" +"","Talaromyces atroroseus str. IBT 11181 (GCA_001907595)","Eurotiales","1441469","ASM190759v1","GCA_001907595.1","","-","-","-","","-" +"","Talaromyces cellulolyticus str. Y-94 (GCA_000829775)","Eurotiales","1472165","TcelY94_1.0","GCA_000829775.1","","-","-","-","","-" +"","Talaromyces islandicus (GCA_000985935)","Eurotiales","28573","PIS","GCA_000985935.1","","-","-","-","","-" +"","Talaromyces marneffei ATCC 18224 (GCA_000001985)","Eurotiales","441960","JCVI-PMFA1-2.0","GCA_000001985.1","","-","-","-","","-" +"","Talaromyces marneffei PM1 (GCA_000750115)","Eurotiales","1077442","ASM75011v1","GCA_000750115.1","","-","-","-","-","-" +"","Talaromyces stipitatus ATCC 10500 (GCA_000003125)","Eurotiales","441959","JCVI-TSTA1-3.0","GCA_000003125.1","","-","-","-","","-" +"","Termitomyces sp. J132 (GCA_001263195)","Agaricales","1306850","TerJ1321.0","GCA_001263195.1","","-","-","-","","-" +"","Testicularia cyperi str. MCA 3645 (GCA_003144125)","Ustilaginales","1882483","Tescy1","GCA_003144125.1","","-","-","-","","-" +"","Tetrapisispora blattae CBS 6284 (GCA_000315915)","Saccharomycetales","1071380","ASM31591v1","GCA_000315915.1","","-","-","-","","-" +"","Tetrapisispora phaffii CBS 4417 (GCA_000236905)","Saccharomycetales","1071381","ASM23690v1","GCA_000236905.1","","-","-","-","","-" +"","Thermothelomyces thermophila ATCC 42464 (GCA_000226095)","Sordariales","573729","ASM22609v1","GCA_000226095.1","","-","-","-","","-" +"","Thielavia terrestris NRRL 8126 (GCA_000226115)","Sordariales","578455","ASM22611v1","GCA_000226115.1","","-","-","-","","-" +"","Thielaviopsis punctulata (GCA_000968615)","Microascales","72032","ASM96861v1","GCA_000968615.1","","-","-","-","","-" +"","Tilletia caries str. DAOM 238032 (GCA_001645005)","","13290","ASM164500v1","GCA_001645005.1","","-","-","-","","-" +"","Tilletia controversa str. DAOM 236426 (GCA_001645045)","","13291","ASM164504v1","GCA_001645045.1","","-","-","-","","-" +"","Tilletia indica str. DAOM 236416 (GCA_001645015)","","43049","ASM164501v1","GCA_001645015.1","","-","-","-","","-" +"","Tilletia walkeri str. DAOM 236422 (GCA_001645055)","","117179","ASM164505v1","GCA_001645055.1","","-","-","-","","-" +"","Tilletiaria anomala UBC 951 (GCA_000711695)","Georgefischeriales","1037660","Tilletiaria_anomala_UBC_951_v1.0","GCA_000711695.1","","-","-","-","","-" +"","Tilletiopsis washingtonensis str. MCA 4186 (GCA_003144115)","","58919","Tilwa1","GCA_003144115.1","","-","-","-","","-" +"","Tolypocladium capitatum str. CBS 113982 (GCA_002901185)","Hypocreales","45235","ASM290118v1","GCA_002901185.1","","-","-","-","","-" +"","Tolypocladium ophioglossoides CBS 100239 (GCA_001189435)","Hypocreales","1163406","Tophv1.0","GCA_001189435.1","","-","-","-","","-" +"","Tolypocladium paradoxum str. NRBC 100945 (GCA_002916505)","Hypocreales","94208","ASM291650v1","GCA_002916505.1","","-","-","-","","-" +"","Torrubiella hemipterigena str. BCC 1449 (GCA_000825705)","Hypocreales","1531966","Allpaths-LG","GCA_000825705.1","","-","-","-","","-" +"","Tortispora caseinolytica NRRL Y-17796 (GCA_001661475)","Saccharomycetales","767744","Canca1","GCA_001661475.1","","-","-","-","","-" +"","Torulaspora delbrueckii str. CBS 1146 (GCA_000243375)","Saccharomycetales","4950","ASM24337v1","GCA_000243375.1","","-","-","-","","-" +"","Trachipleistophora hominis (GCA_000316135)","Pleistophoridae","72359","ASM31613v1","GCA_000316135.1","","-","-","-","","-" +"","Trametes cinnabarina str. BRFM137 (GCA_000765035)","Polyporales","5643","BN946","GCA_000765035.1","","-","-","-","","-" +"","Trametes coccinea BRFM310 (GCA_002092935)","Polyporales","1353009","Pycco1","GCA_002092935.1","","-","-","-","","-" +"","Trametes pubescens str. FBCC735 (GCA_001895945)","Polyporales","154538","ASM189594v1","GCA_001895945.1","","-","-","-","","-" +"","Trametes versicolor FP-101664 SS1 (GCA_000271585)","Polyporales","717944","Trametes_versicolor_v1.0","GCA_000271585.1","","-","-","-","","-" +"","Tremella mesenterica DSM 1558 (GCA_000271645)","Tremellales","578456","Treme1","GCA_000271645.1","","-","-","-","","-" +"","Trichoderma asperellum CBS 433.97 (GCA_003025105)","Hypocreales","1042311","Trias_v._1.0","GCA_003025105.1","","-","-","-","","-" +"","Trichoderma atroviride IMI 206040 (GCA_000171015)","Hypocreales","452589","TRIAT_v2.0","GCA_000171015.2","","-","-","-","","-" +"","Trichoderma citrinoviride str. TUCIM 6016 (GCA_003025115)","Hypocreales","58853","Trici_v4.0","GCA_003025115.1","","-","-","-","","-" +"","Trichoderma gamsii str. T6085 (GCA_001481775)","Hypocreales","398673","TGAM01v2","GCA_001481775.2","","-","-","-","","-" +"","Trichoderma guizhouense str. NJAU 4742 (GCA_002022785)","Hypocreales","1491466","ASM202278v1","GCA_002022785.1","","-","-","-","","-" +"","Trichoderma harzianum CBS 226.95 (GCA_003025095)","Hypocreales","983964","Allpaths-LG_v._01_03_12","GCA_003025095.1","","-","-","-","-","-" +"","Trichoderma harzianum str. T6776 (GCA_000988865)","Hypocreales","5544","ASM98886v1","GCA_000988865.1","","-","-","-","","-" +"","Trichoderma harzianum str. TR274 (GCA_002838845)","Hypocreales","5544","ASM283884v1","GCA_002838845.1","","-","-","-","-","-" +"","Trichoderma harzianum str. Tr1 (GCA_002894145)","Hypocreales","5544","Tr1","GCA_002894145.1","","-","-","-","-","-" +"","Trichoderma longibrachiatum ATCC 18648 (GCA_003025155)","Hypocreales","983965","Trilo3","GCA_003025155.1","","-","-","-","","-" +"","Trichoderma parareesei (GCA_001050175)","Hypocreales","858221","Tpara_v1.0","GCA_001050175.1","","-","-","-","","-" +"","Trichoderma reesei","Hypocreales","431241","GCA_000167675.2","GCA_000167675.2","","-","-","","","-" +"","Trichoderma reesei RUT C-30 (GCA_000513815)","Hypocreales","1344414","TrireRUTC30_1","GCA_000513815.1","","-","-","-","-","-" +"","Trichoderma virens","Hypocreales","413071","ASM17099v1","GCA_000170995.2","","-","","","","-" +"","Trichophyton benhamiae CBS 112371 (GCA_000151125)","Onygenales","663331","ASM15112v2","GCA_000151125.2","","-","-","-","","-" +"","Trichophyton equinum CBS 127.97 (GCA_000151175)","Onygenales","559882","ASM15117v1","GCA_000151175.1","","-","-","-","","-" +"","Trichophyton interdigitale H6 (GCA_000616785)","Onygenales","1215336","Tric_rubr_H6_V2","GCA_000616785.1","","-","-","-","-","-" +"","Trichophyton interdigitale MR816 (GCA_000622975)","Onygenales","1215338","Tric_inte_MR816_V1","GCA_000622975.1","","-","-","-","","-" +"","Trichophyton mentagrophytes str. TIMM 2789 (GCA_003118255)","Onygenales","523103","ABySS_70bp_45k_152cov_v1","GCA_003118255.1","","-","-","-","","-" +"","Trichophyton rubrum CBS 100081 (GCA_000616805)","Onygenales","1215328","Tric_fish_CBS_100081_V1","GCA_000616805.1","","-","-","-","-","-" +"","Trichophyton rubrum CBS 118892 (GCA_000151425)","Onygenales","559305","ASM15142v1","GCA_000151425.1","","-","-","-","","-" +"","Trichophyton rubrum CBS 202.88 (GCA_000616985)","Onygenales","1215334","Tric_raub_CBS_202_88_V2","GCA_000616985.1","","-","-","-","-","-" +"","Trichophyton rubrum CBS 288.86 (GCA_000616825)","Onygenales","1215330","Tric_fish_CBS_288_86_V1","GCA_000616825.1","","-","-","-","-","-" +"","Trichophyton rubrum CBS 289.86 (GCA_000616845)","Onygenales","1215329","Tric_kane_CBS_289_86_V1","GCA_000616845.1","","-","-","-","-","-" +"","Trichophyton rubrum CBS 735.88 (GCA_000616965)","Onygenales","1215332","Tric_megn_CBS_735_88_V1","GCA_000616965.1","","-","-","-","-","-" +"","Trichophyton rubrum D6 (GCA_000622995)","Onygenales","1215335","Tric_rubr_D6_V1","GCA_000622995.1","","-","-","-","-","-" +"","Trichophyton rubrum MR1448 (GCA_000616905)","Onygenales","1215339","Tric_rubr_M1448_V1","GCA_000616905.1","","-","-","-","-","-" +"","Trichophyton rubrum MR1459 (GCA_000616945)","Onygenales","1215341","Tric_rubr_MR1459_V1","GCA_000616945.1","","-","-","-","-","-" +"","Trichophyton rubrum MR850 (GCA_000616765)","Onygenales","1215337","Tric_rubr_MR-850_V1","GCA_000616765.1","","-","-","-","-","-" +"","Trichophyton rubrum str. CMCC(F)T1i (GCA_001651445)","Onygenales","5551","CMCC_F_T1i","GCA_001651445.1","","-","-","-","-","-" +"","Trichophyton soudanense CBS 452.61 (GCA_000616865)","Onygenales","1215331","Tric_soud_CBS_452_61_V1","GCA_000616865.1","","-","-","-","","-" +"","Trichophyton tonsurans CBS 112818 (GCA_000151455)","Onygenales","647933","ASM15145v1","GCA_000151455.1","","-","-","-","","-" +"","Trichophyton verrucosum HKI 0517 (GCA_000151505)","Onygenales","663202","ASM15150v1","GCA_000151505.1","","-","-","-","","-" +"","Trichophyton violaceum str. CMCC(F)T3l (GCA_001651435)","Onygenales","34388","CMCC_F_T3l","GCA_001651435.1","","-","-","-","","-" +"","Trichosporon asahii var. asahii CBS 2479 (GCA_000293215)","","1186058","Trichosporon_asahii_1","GCA_000293215.1","","-","-","-","-","-" +"","Trichosporon asahii var. asahii CBS 8904 (GCA_000299215)","","1220162","ASM29921v2","GCA_000299215.2","","-","-","-","","-" +"","Tsuchiyaea wingfieldii CBS 7118 (GCA_001720155)","Tremellales","1295528","Tsuc_wing_CBS7118_V1","GCA_001720155.1","","-","-","-","","-" +"","Tuber borchii str. Tbo3840 (GCA_003070745)","Pezizales","42251","Tubbor1","GCA_003070745.1","","-","-","-","","-" +"","Tuber magnatum (GCA_003182015)","Pezizales","42249","ASM318201v1","GCA_003182015.1","","-","-","-","","-" +"","Tuber melanosporum","Pezizales","656061","ASM15164v1","GCA_000151645.1","","-","-","","","-" +"","Tulasnella calospora MUT 4182 (GCA_000827465)","Cantharellales","1051891","Tulasnella_calospora_AL13_4D_v1.0","GCA_000827465.1","","-","-","-","","-" +"","Umbilicaria pustulata (GCA_900169345)","","136370","Lasallia_pustulata_v1","GCA_900169345.1","","-","-","-","-","-" +"","Uncinocarpus reesii 1704 str. UAMH 1704 (GCA_000003515)","Onygenales","336963","ASM351v2","GCA_000003515.2","","-","-","-","","-" +"","Ustilaginoidea virens (GCA_000965225)","Hypocreales","1159556","ASM96522v2","GCA_000965225.2","","-","-","-","-","-" +"","Ustilaginoidea virens str. UV-8b (GCA_000687475)","Hypocreales","1159556","Assembly_for_version_1_of_the_Villosiclava_virens_genome","GCA_000687475.1","","-","-","-","","-" +"","Ustilaginomycotina sp. SA 807 (GCA_003144235)","","1673888","Ustsp1","GCA_003144235.1","","-","-","-","","-" +"","Ustilago bromivora str. UB2112 (GCA_900080155)","Ustilaginales","307758","UBRO_v3","GCA_900080155.1","","-","-","-","-","-" +"","Ustilago hordei str. Uh4857-4 (GCA_000286035)","Ustilaginales","120017","ASM28603v1","GCA_000286035.1","","-","-","-","","-" +"","Ustilago maydis","Ustilaginales","237631","Umaydis521_2.0","GCA_000328475.2","","-","-","","","" +"","Valsa mali str. 03-8 (GCA_000818155)","Sordariomycetidae","105487","ASM81815v1","GCA_000818155.1","","-","-","-","-","-" +"","Valsa mali var. pyri str. SXYL134 (GCA_000813385)","Sordariomycetidae","694573","ASM81338v1","GCA_000813385.1","","-","-","-","","-" +"","Vanderwaltozyma polyspora DSM 70294 (GCA_000150035)","Saccharomycetales","436907","ASM15003v1","GCA_000150035.1","","-","-","-","","-" +"","Vavraia culicis subsp. floridensis (GCA_000192795)","Pleistophoridae","948595","Vavr_culi_floridensis_V1","GCA_000192795.1","","-","-","-","","-" +"","Verruconis gallopava str. CBS 43764 (GCA_000836295)","Venturiales","253628","O_gall_CBS43764","GCA_000836295.1","","-","-","-","-","-" +"","Verticillium alfalfae VaMs.102 (GCA_000150825)","Glomerellales","526221","ASM15082v1","GCA_000150825.1","","-","-","-","-","-" +"","Verticillium dahliae","Glomerellales","498257","ASM15067v2","GCA_000150675.2","","-","-","","","-" +"","Verticillium dahliae (GCA_002892995)","Glomerellales","27337","ASM289299v1","GCA_002892995.1","","-","-","-","-","-" +"","Verticillium dahliae (GCA_002893025)","Glomerellales","27337","ASM289302v1","GCA_002893025.1","","-","-","-","-","-" +"","Verticillium dahliae (GCA_002893035)","Glomerellales","27337","ASM289303v1","GCA_002893035.1","","-","-","-","-","-" +"","Verticillium dahliae (GCA_002893045)","Glomerellales","27337","ASM289304v1","GCA_002893045.1","","-","-","-","-","-" +"","Verticillium dahliae JR2","Glomerellales","1202531","VDAG_JR2v.4.0","GCA_000400815.2","","-","-","","-","-" +"","Verticillium dahliae str. 12008 (GCA_002892985)","Glomerellales","27337","ASM289298v1","GCA_002892985.1","","-","-","-","-","-" +"","Verticillium longisporum (GCA_001268145)","Glomerellales","100787","vl1.denovo.v1","GCA_001268145.1","","-","-","-","-","-" +"","Verticillium longisporum (GCA_001268165)","Glomerellales","100787","vl2.denovo.v1","GCA_001268165.1","","-","-","-","","-" +"","Vittaforma corneae ATCC 50505 (GCA_000231115)","Nosematidae","993615","Vitt_corn_V1","GCA_000231115.1","","-","-","-","","-" +"","Wallemia ichthyophaga EXF-994 (GCA_000400465)","Wallemiales","1299270","Wallemia_ichthyophaga_version_1.0","GCA_000400465.1","","-","-","-","","-" +"","Wallemia mellicola CBS 633.66 (GCA_000263375)","Wallemiales","671144","Wallemia_sebi_v1.0","GCA_000263375.1","","-","-","-","","-" +"","Wickerhamiella sorbophila str. DS02 (GCA_002251995)","Saccharomycetales","45607","ASM225199v2","GCA_002251995.2","","-","-","-","","-" +"","Wickerhamomyces anomalus NRRL Y-366-8 (GCA_001661255)","Saccharomycetales","683960","Wican1","GCA_001661255.1","","-","-","-","","-" +"","Wickerhamomyces ciferrii str. NRRL Y-1031 (GCA_000313485)","Saccharomycetales","1041607","ASM31348v1","GCA_000313485.1","","-","-","-","","-" +"","Wolfiporia cocos MD-104 SS10 (GCA_000344635)","Polyporales","742152","Wolco1","GCA_000344635.1","","-","-","-","","-" +"","Xanthophyllomyces dendrorhous (GCA_001007165)","Cystofilobasidiales","5421","Xden1","GCA_001007165.2","","-","-","-","-","-" +"","Xylona heveae TC161 (GCA_001619985)","","1328760","Xylona_heveae_TC161_v1.0","GCA_001619985.1","","-","-","-","","-" +"","Yarrowia lipolytica","Saccharomycetales","284591","GCA_000002525.1","GCA_000002525.1","","-","-","","-","-" +"","Yarrowia lipolytica (GCA_900087985)","Saccharomycetales","4952","YALIA101","GCA_900087985.1","","-","-","-","","-" +"","Yarrowia lipolytica str. CLIB89 (W29) (GCA_001761485)","Saccharomycetales","4952","ASM176148v1","GCA_001761485.1","","-","-","-","-","-" +"","Zygosaccharomyces bailii (GCA_900162805)","Saccharomycetales","4954","version_1","GCA_900162805.1","","-","-","-","-","-" +"","Zygosaccharomyces bailii CLIB 213 (GCA_000442885)","Saccharomycetales","1333698","ZYBA0","GCA_000442885.1","","-","-","-","","-" +"","Zygosaccharomyces bailii ISA1307 (GCA_000530735)","Saccharomycetales","1355161","Z_bailii_ISA1307_version_3","GCA_000530735.1","","-","-","-","-","-" +"","Zygosaccharomyces parabailii str. ATCC 60483 (GCA_001984395)","Saccharomycetales","1365886","ASM198439v2","GCA_001984395.2","","-","-","-","","-" +"","Zygosaccharomyces rouxii str. CBS 732 (GCA_000026365)","Saccharomycetales","4956","ASM2636v1","GCA_000026365.1","","-","-","-","","-" +"","Zygosaccharomyces rouxii str. NBRC110957 (GCA_001972345)","Saccharomycetales","4956","ZYGR_assembly01","GCA_001972345.1","","-","-","-","-","-" +"","Zymoseptoria brevis str. Zb18110 (GCA_000966595)","Capnodiales","1047168","ASM96659v1","GCA_000966595.1","","-","-","-","","-" +"","Zymoseptoria tritici","Capnodiales","336722","MG2","GCA_000219625.1","","-","-","","","" +"","Zymoseptoria tritici ST99CH_1A5 (GCA_900099495)","Capnodiales","1276529","ZT1A5_complete_assembly","GCA_900099495.1","","-","-","-","-","-" +"","Zymoseptoria tritici ST99CH_1E4 (GCA_900184115)","Capnodiales","1276532","ST99CH_1E4","GCA_900184115.1","","-","-","-","-","-" +"","Zymoseptoria tritici ST99CH_3D1 (GCA_900184105)","Capnodiales","1276537","ST99CH_3D1","GCA_900184105.1","","-","-","-","-","-" +"","Zymoseptoria tritici ST99CH_3D7 (GCA_900091695)","Capnodiales","1276538","Zt_ST99CH_3D7","GCA_900091695.1","","-","-","-","-","-" +"","[Candida] arabinofermentans NRRL YB-2248 (GCA_001661425)","Saccharomycetales","983967","Canar1","GCA_001661425.1","","-","-","-","-","-" +"","[Candida] auris (GCA_002759435)","Saccharomycetales","498019","Cand_auris_B8441_V2","GCA_002759435.2","","-","-","-","-","-" +"","[Candida] auris (GCA_002775015)","Saccharomycetales","498019","Cand_auris_B11221_V1","GCA_002775015.1","","-","-","-","-","-" +"","[Candida] auris (GCA_003013715)","Saccharomycetales","498019","Cand_auris_B11220","GCA_003013715.1","","-","-","-","-","-" +"","[Candida] auris (GCA_003014415)","Saccharomycetales","498019","Cand_auris_B11243","GCA_003014415.1","","-","-","-","-","-" +"","[Candida] auris str. 6684 (GCA_001189475)","Saccharomycetales","498019","ASM118947v1","GCA_001189475.1","","-","-","-","","-" +"","[Candida] duobushaemulonis str. B09383 (GCA_002926085)","Saccharomycetales","1231522","CanDuoHae_v1.0","GCA_002926085.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466525)","Saccharomycetales","5478","ASM146652v1","GCA_001466525.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466535)","Saccharomycetales","5478","ASM146653v1","GCA_001466535.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466565)","Saccharomycetales","5478","ASM146656v1","GCA_001466565.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466575)","Saccharomycetales","5478","ASM146657v1","GCA_001466575.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466635)","Saccharomycetales","5478","ASM146663v1","GCA_001466635.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_001466685)","Saccharomycetales","5478","ASM146668v1","GCA_001466685.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_002219185)","Saccharomycetales","5478","ASM221918v1","GCA_002219185.1","","-","-","-","-","-" +"","[Candida] glabrata (GCA_002219195)","Saccharomycetales","5478","ASM221919v1","GCA_002219195.1","","-","-","-","-","-" +"","[Candida] glabrata str. CBS138 (GCA_000002545)","Saccharomycetales","5478","ASM254v2","GCA_000002545.2","","-","-","-","","-" +"","[Candida] haemulonis str. B11899 (GCA_002926055)","Saccharomycetales","45357","CanHae_1.0","GCA_002926055.1","","-","-","-","-","-" +"","[Candida] intermedia (GCA_900106115)","Saccharomycetales","45354","CBS_141442_assembly","GCA_900106115.1","","-","-","-","-","-" +"","[Candida] intermedia (GCA_900106125)","Saccharomycetales","45354","PYCC_4715_assembly","GCA_900106125.1","","-","-","-","-","-" +"","[Candida] pseudohaemulonis str. B12108 (GCA_003013735)","Saccharomycetales","418784","Cand_pseudohaemulonii_B12108","GCA_003013735.1","","-","-","-","-","-" +"","[Candida] tenuis ATCC 10573 (GCA_000223465)","Saccharomycetales","590646","Candida_tenuis_v1.0","GCA_000223465.1","","-","-","-","-","-" diff --git a/data/myCodons.rds b/data/myCodons.rds new file mode 100644 index 0000000..a53a0da Binary files /dev/null and b/data/myCodons.rds differ diff --git a/data/pdbRep.RData b/data/pdbRep.RData deleted file mode 100644 index 0dd4a58..0000000 Binary files a/data/pdbRep.RData and /dev/null differ diff --git a/data/pdbRep.rds b/data/pdbRep.rds new file mode 100644 index 0000000..6bbfc4d Binary files /dev/null and b/data/pdbRep.rds differ diff --git a/data/refDB.rds b/data/refDB.rds new file mode 100644 index 0000000..9eaf8fc Binary files /dev/null and b/data/refDB.rds differ diff --git a/data/sDat.rds b/data/sDat.rds new file mode 100644 index 0000000..9d0ff5b Binary files /dev/null and b/data/sDat.rds differ diff --git a/data/scCCnet.RData b/data/scCCnet.RData deleted file mode 100644 index 11fbdb8..0000000 Binary files a/data/scCCnet.RData and /dev/null differ diff --git a/data/scCCnet.rds b/data/scCCnet.rds new file mode 100644 index 0000000..4e27f9c Binary files /dev/null and b/data/scCCnet.rds differ diff --git a/scripts/ABC-makeMYSPElist.R b/scripts/ABC-makeMYSPElist.R index 555d6b3..7acd131 100644 --- a/scripts/ABC-makeMYSPElist.R +++ b/scripts/ABC-makeMYSPElist.R @@ -1,14 +1,16 @@ -# ABC_makeMYSPElist.R +# tocID <- "scripts/ABC-makeMYSPElist.R" # # Purpose: Create a list of genome sequenced fungi with protein annotations and # Mbp1 homologues. # -# Version: 1.2 +# Version: 1.3 # -# Date: 2016 09 - 2019 01 +# Date: 2016 09 - 2020 09 # Author: Boris Steipe (boris.steipe@utoronto.ca) # # Versions +# 1.3 Rewrite to change datasource. NCBI has not been updated +# since 2012. Use ensembl fungi as initial source. # 1.2 Change from require() to requireNamespace() # 1.1.2 Moved BLAST.R to ./scripts directory # 1.1 Update 2017 @@ -36,18 +38,17 @@ #TOC> ========================================================================== #TOC> -#TOC> Section Title Line -#TOC> --------------------------------------------------------- -#TOC> 1 The strategy 55 -#TOC> 2 GOLD species 67 -#TOC> 2.1 Initialize 72 -#TOC> 2.2 Import 79 -#TOC> 2.3 Unique species 131 -#TOC> 3 BLAST species 173 -#TOC> 3.1 find homologous proteins 180 -#TOC> 3.2 Identify species in "hits" 204 -#TOC> 4 Intersect GOLD and BLAST species 249 -#TOC> 5 Cleanup and finish 267 +#TOC> Section Title Line +#TOC> -------------------------------------------------------- +#TOC> 1 The strategy 56 +#TOC> 2 PACKAGES AND INITIALIZATIONS 68 +#TOC> 3 ENSEMBL FUNGI 76 +#TOC> 3.1 Import 79 +#TOC> 4 BLAST SEARCH 156 +#TOC> 4.1 find homologous proteins 162 +#TOC> 4.2 Identify species in "hits" 193 +#TOC> 5 MERGE ENSEMBL AND BLAST RESULTS 283 +#TOC> 6 STUDENT NUMBERS 366 #TOC> #TOC> ========================================================================== @@ -55,129 +56,110 @@ # = 1 The strategy ======================================================== # This script will create a list of "MYSPE" species and save it in an R object -# MYSPEspecies that is stored in the data subdirectory of this project from where -# it can be loaded. The strategy is as follows: we download a list of all -# genome projects and then select species for which protein annotations are -# available - i.e. these are all genome-sequenced species that have been -# annotated. Then we search for fungal species that have homologues to MBP1. -# Then we intersect the two lists to give us genome-sequenced species that -# also have Mbp1 homologues ... +# MYSPEspecies that is stored in the data subdirectory of this project from +# where it can be loaded. The strategy is as follows: we download a list of +# annotated fungal genomes from ensembl.fungi. All these are genome-sequenced +# species that have been annotated. +# Next we perform a BLAST search, to identify fungal species that have +# genes that are homologous to yeast MBP1. +# +# ... - -# = 2 GOLD species ======================================================== - -# Fetch and parse the Genomes OnLine Database of the Joint Genome Institute -# (https://gold.jgi.doe.gov/). Use the data that is hosted at the NCBI. - -# == 2.1 Initialize ======================================================== +# = 2 PACKAGES AND INITIALIZATIONS ======================================== # httr provides interfaces to Webservers on the Internet if (! requireNamespace("httr", quietly = TRUE)) { install.packages("httr") } -# == 2.2 Import ============================================================ -# The URL of the genome data directory at the NCBI: -# is https://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS -# Note the relative size of the prokaryotes and the eukaryotes data. - -# What's in this directory? -URL <- "ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/README" -GOLDreadme <- readLines(URL) # read the file into a vector -cat(GOLDreadme, sep = "\n") # display the contents - -# Retrieve the file "eukaryotes" via ftp from the NCBI ftp server and put it -# into a dataframe. This will take a few moments. -# URL <- "ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/eukaryotes.txt" -# GOLDdata <- read.csv(URL, -# header = TRUE, -# sep = "\t", -# stringsAsFactors = FALSE) -# save(GOLDdata, file="data/GOLDdata.RData") -# or ... -load(file="data/GOLDdata.RData") +# = 3 ENSEMBL FUNGI ======================================================= -# What columns does the table have, how is it structured? -str(GOLDdata) +# == 3.1 Import ============================================================ -# What groups of organisms are in the table? How many of each? -table(GOLDdata$Group) +# Navigate to https://fungi.ensembl.org and click on the link to the full +# list of all species: https://fungi.ensembl.org/species.html +# On the page, click on the spreadsheet symbol top right and choose +# "download whole table". The file will be named "Species.csv", in your +# usual downloads folder. Move it to the data folder, and read it. -# What subgroups of fungi do we have? -table(GOLDdata$SubGroup[GOLDdata$Group == "Fungi"]) +sDat <- read.csv("./data/Species.csv") +str(sDat) -# How many of the fungi have protein annotations? The README file told us that -# the column "Proteins" contains "Number of Proteins annotated in the assembly". -# Looking at a few ... -head(GOLDdata$Proteins, 30) -# ... we see that the number varies, and some have a hyphen, i.e. no -# annotations. The hyphens make this a char type column (as per: all elements -# of a vector must have the same type). Therefore we can't read this as numbers -# and filter by some value > 0. But we can filter for all genomes that don't -# have the hyphen: -sum(GOLDdata$Proteins[GOLDdata$Group == "Fungi"] != "-") +# The most obvious way to partition these is according to Classification ... +# (poking around a bit in the UniProt taxonomy database shows that the +# classification used here is the taxonomic rank of "order"). +# how many classifications do we have? +length(unique(sDat$Classification)) # 66 -# Subset the data, with fungi that have protein annotations -GOLDfungi <- GOLDdata[GOLDdata$Group == "Fungi" & - GOLDdata$Proteins != "-" , ] +# To have a good set for the class, we should have about 100. +# Let's see for which of these we can find Mbp1 homologues. +# First, we'll keep only the colums for name, classification, and taxID, and +# drop the rest ... +sDat <- sDat[ , c("Name", "Classification", "Taxon.ID")] +colnames(sDat) <- c("name", "order", "taxID") -# check what we have in the table -nrow(GOLDfungi) -head(GOLDfungi) +# Next, we make an extra column: genus - the first part of the binomial name. +# We'll use the gsub() function, and for that we need a "regular expression" +# that matches to all characters from the first blank to the end of the string: +myPatt <- "\\s.*$" # one whitespace (\\s) ... + # followed by any character (.) 0..n times (*) ... + # until the end of the string +# using gsub() we substitue all matching characters with the empty string "" - +# this deletes the matching characters +# Test this: +gsub(myPatt, "", "Genus") # one word: unchanged +gsub(myPatt, "", "gEnus species") # two words: return only first +gsub(myPatt, "", "geNus species strain 123") # many words: return only first -# == 2.3 Unique species ==================================================== +# apply this to the "name" column and add the result as a separate column +# called "genus" +sDat$genus <- gsub(myPatt, "", sDat$name) + +# what do we get? +c(head(unique(sDat$genus)), + tail(unique(sDat$genus))) # inspect the first and last few. Note that there + # is a problem that we have to keep in mind. + # (Always inspect your results!) +# Drop all rows for which the genus contains special chracters - +# like "[Candida]" +sDat <- sDat[ ! grepl("[^a-zA-Z]", sDat$genus) , ] + +length(table(sDat$genus)) # how many genus? +hist(table(sDat$genus), col = "#E9F4FF") # Distribution ... + # most genus have very few, but + # some have very many species. +sort(table(sDat$genus), decreasing = TRUE)[1:10] # Top ten... + +# We should have at least one species from each taxonomic order, but we can +# add a few genus until we have about 100 validated species. + +# Let's add a column for species, by changing our regular expression a bit, +# using ^ (start of string), \\S (NOT a whitespace), +# and + (one or more matches), capturing the match (...), and returning +# it as the substitution (\\1) ... + +myPatt <- "^(\\S+\\s\\S+)\\s.*$" +sDat$species <- gsub(myPatt, "\\1", sDat$name) + +# And we reorder the columns, just for aesthetics: +sDat <- sDat[ , c("name", "species", "genus", "order", "taxID")] + +# Final check: +any(grepl("[^a-zA-Z -]", sDat$species)) # FALSE means no special characters -# For our purpose of defining species, we will select only species, not strains -# from this list. To do this, we pick the first two words i.e. the systematic -# binomial name from the "X.Organism.Name" column, and then we remove redundant -# species. Here is a function: # +# Now we check which of these have Mbp1 homologues ... -getBinom <- function(s) { - # Fetch the first two words from a string. - # Parameters: - # s: char a string which is expected to contain a binomial species name - # as the first two words, possibly followed by other text. - # Value: char the first two words separated by a single blank - # - x <- unlist(strsplit(s, "\\s+")) # split s on one or more whitespace - return(paste(x[1:2], collapse=" ")) # return first two elements -} - -# iterate through GOLDdata and extract species names -GOLDspecies <- character() -for (i in 1:nrow(GOLDfungi)) { - GOLDspecies[i] <- getBinom(GOLDfungi$X.Organism.Name[i]) -} -head(GOLDspecies) -length(GOLDspecies) - -# N.b. this would be more efficiently (but perhaps less explicitly) coded with -# one of the apply() functions, instead of a for-loop. -# GOLDspecies <- unlist(lapply(GOLDfungi$X.Organism.Name, getBinom)) - -# Species of great interest may appear more than once, one for each sequenced -# strain: e.g. brewer's yeast: -sum(GOLDspecies == "Saccharomyces cerevisiae") - -# Therefore we use the function unique() to throw out duplicates. Simple: -GOLDspecies <- unique(GOLDspecies) - -length(GOLDspecies) -# i.e. we got rid of about 40% of the species by removing duplicates. +# = 4 BLAST SEARCH ======================================================== -# = 3 BLAST species ======================================================= -# -# Next, we filter our list by species that have homologues to the yeast Mbp1 -# gene. To do this we run a BLAST search to find all related proteins in any -# fungus. We list the species that appear in that list, and then we select those -# that appear in our GOLD table as well. -# -# == 3.1 find homologous proteins ========================================== +# We run a BLAST search to find all proteins related to yeast Mbp1 in any +# fungus. With the results, we'll annotate our sDat table. + +# == 4.1 find homologous proteins ========================================== # # Use BLAST to fetch proteins related to Mbp1 and identify the species that # contain them. @@ -188,20 +170,27 @@ length(GOLDspecies) # to make a BLAST interface (demo-quality, not research-quality) is in the file # ./scripts/BLAST.R Feel encouraged to study how this works. It's a pretty # standard task of communicating with servers and parsing responses - everyday -# fare in thebioinformatics lab. Surprisingly, there seems to be no good BLAST +# fare in the bioinformatics lab. Surprisingly, there seems to be no good BLAST # parser in currently available packages. - -# source("./scripts/BLAST.R") # load the function and its utilities +# +# DON'T use this for BLAST searches unless you have read the NCBI policy +# for automated tasks. If you indicriminately pound on the NCBI's BLAST +# server, they will blacklist your IP-address. See: +# https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=DeveloperInfo +# # Use BLAST() to find yeast Mbp1 homologues in other fungi in refseq # BLASThits <- BLAST("NP_010227", # Yeast Mbp1 RefSeq ID # db = "refseq_protein", # database to search in -# nHits = 3000, # 720 hits in 2017 +# nHits = 3000, # 945 hits in 2020 # E = 0.01, # # limits = "txid4751[ORGN]") # = fungi -# save(BLASThits, file="data/BLASThits.RData") -load(file="data/BLASThits.RData") +# saveRDS(BLASThits, file="data/BLASThits.rds") +# +# NO NEED TO ACTUALLY RUN THIS:you can load the results from the data directory +# +BLASThits <- readRDS(file = "data/BLASThits.rds") -# == 3.2 Identify species in "hits" ======================================== +# == 4.2 Identify species in "hits" ======================================== # This is a very big list that can't be usefully analyzed manually. Here # we are only interested in the species names that it contains. @@ -224,61 +213,208 @@ str(BLASThits$hit[[277]]) BLASTspecies <- character() for (i in seq_along(BLASThits$hits)) { - BLASTspecies[i] <-BLASThits$hits[[i]]$species + BLASTspecies[i] <- BLASThits$hits[[i]]$species } # You can confirm that BLASTspecies has the expected size. length(BLASTspecies) +# if we delete some of these later on, we still want to remember which hit +# they came from. Thus we name() the elements with their index, which is the +# same as the index of the hit in BLASThits +names(BLASTspecies) <- 1:length(BLASTspecies) + + +# let's plot the distribution of E-values +eVals <- numeric() +for (i in seq_along(BLASThits$hits)) { + eVals[i] <- BLASThits$hits[[i]]$E +} +range(eVals) +sum(eVals == 0) + +# let's plot the log of all values > 0 to see how they are distributed +# plotting only one vectyor of numbers plots their index as x, and +# their value as y ... +plot(log(eVals[eVals > 0]), col = "#CC0000") + +# This is very informative: I would suspect that the first ten or so are +# virtually identical to the yeast protein, then we have about 700 hits with +# decreasing similarity, and then about 200 more that may actually be false +# positives. Also - we plotted them by index, that means the table is SORTED: +# Lower E-values strictly come before higher E-values. + # Again, some species appear more than once, e.g. ... sum(BLASTspecies == "Saccharomyces cerevisiae") # ... corresponding to the five homologous gene sequences (paralogues) of yeast. -# Therefore we use unique() to throw out duplicates: -BLASTspecies <- unique(BLASTspecies) +# Therefore we remove duplicates. Removing duplicates will leave the FIRST +# in a list alone, and only remove the SUBSEQUENT ones. Which means, from each +# species, we will retain only the protein that has the highest similarity +# to yeast Mbp1, not any of its more distant paralogues. +sel <- ! duplicated(BLASTspecies) +BLASTspecies <- BLASTspecies[sel] length(BLASTspecies) # i.e. we got rid of about two thirds of the hits. +tail(BLASTspecies) # see how the names are useful! + # again - there are some special characters ... + # what are they? +BLASTspecies[grep("[^a-zA-Z ]", BLASTspecies)] -# You should think about this: what is the biological interpretation of the -# finding that on average we have three sequences that are similar to Mbp1 in -# other species? +# remove the brackets ... +BLASTspecies <- gsub("\\[|\\]", "", BLASTspecies) +# drop any new duplicates ... +BLASTspecies <- BLASTspecies[ ! duplicated(BLASTspecies)] + +# check the number again: +length(BLASTspecies) +# Think a bit about this: what may be the biological reason to find that +# on average, in 300 fungi across the entire phylogenetic tree, we have +# three sequences that are homologous to yeast Mbp1? + +# Let's look at the distribution of E-values in this selection (Subsetting FTW): +# we plot all values that are TRUE in the vector "sel" that we created above, +# AND greater than 0 +plot(log(eVals[sel & eVals > 0]), col = "#00CC00") -# = 4 Intersect GOLD and BLAST species ==================================== +# = 5 MERGE ENSEMBL AND BLAST RESULTS ===================================== -# Now we can compare the two lists for species that appear in both sources: the -# simplest way is to use the set operation functions union(), intersection() -# etc. See here: -?union - -MYSPEspecies <- intersect(GOLDspecies, BLASTspecies) - -# Again: interpret this: -# - what is the number of GOLDspecies? -# - what is the number of BLAST species? -# - how many species are present in both lists? -# - what does it mean if a species is in GOLD but not in the BLAST list? -# - what does it mean if a species has been found during BLAST, but it -# is not in GOLD? - - -# = 5 Cleanup and finish ================================================== - -# One final thing: some of the species will be our so-called "reference" species -# which we use for model solutions and examples in the course. They are defined -# in the .utilities.R file of this project. We remove them from the list so that -# we don't inadvertently assign them. +# Next we add the blast result to our sDat dataframe. We'll store the index, +# the E-value, and the Query-bounds from which we can estimate which domains +# of Mbp1 are actually covered by the hit. (True orthologues MUST align with +# Mbp1's N-terminal APSES domain.) # +# First we pull the hits we wanted from the BLASTspecies: +iHits <- as.numeric(names(BLASTspecies)) +length(iHits) # one index for each TRUE in sel -REFspecies +# add columns to sDat +l <- nrow(sDat) +sDat$iHit <- numeric(l) # index of the hit in the BLAST results +sDat$eVal <- numeric(l) # E-value of the hit +sDat$lAli <- numeric(l) # length of the aligned region -MYSPEspecies <- sort(setdiff(MYSPEspecies, REFspecies)) +# extract and merge +for (iHit in iHits) { + thisSp <- BLASThits$hits[[iHit]]$species + sel <- sDat$species == thisSp -# save(MYSPEspecies, file = "data/MYSPEspecies.RData") + sDat$iHit[sel] <- iHit + sDat$eVal[sel] <- BLASThits$hits[[iHit]]$E + sDat$lAli[sel] <- BLASThits$hits[[iHit]]$lengthAli +} + +# Are all reference species accounted for? +selA <- sDat$iHit != 0 # all rows which matched to a BLAST hit +REFspecies %in% sDat$species[selA] # yes, all there + +selB <- sDat$species %in% REFspecies # all rows which have one of REF species + +sum(selA & selB) # How many rows? + +# sDat of course includes all duplicates. Some may be multiply sequenced, some +# may be different strains. We'll use the same strategy as before and keep +# only the best hit: order the rows by E-value, then drop all rows which +# are duplicated. + + +# drop all rows without BLAST hits ... +sDat <- sDat[ ! (sDat$iHit == 0) , ] + +# order sDat by E-value ... +sDat <- sDat[order(sDat$eVal, decreasing = FALSE) , ] + +# drop all rows with duplicated species ... +sDat <- sDat[ ! duplicated(sDat$species) , ] + +# Lets look at the E-values ... +plot(log(sDat$eVal[sDat$eVal > 0]), col = "#00CC00") + +# and alignment lengths ... +plot(sDat$lAli, col = "#00DDAA") + +# How many ... +length(unique(sDat$name)) +length(unique(sDat$species)) +length(unique(sDat$genus)) +length(unique(sDat$order)) + +# To get the final dataset, we remove the reference species with their +# entire orders ... +REForders <- unique(sDat$order[sDat$species %in% REFspecies]) +sel <- sDat$order %in% REForders +REFdat <- sDat[sel , ] +sDat <- sDat[ ! sel , ] + +# REFdat should now contain only the REFspecies ... +( REFdat <- REFdat[REFdat$species %in% REFspecies , ] ) + +# ... but all of them +sum(REFspecies %in% REFdat$species) + +# ... and we have enough left in sDat to prune sDat to unique genus ... +sDat <- sDat[ ! duplicated(sDat$genus) , ] + +# saveRDS(sDat, file = "data/sDat.rds") +# saveRDS(REFdat, file = "data/REFdat.rds") +# = 6 STUDENT NUMBERS ===================================================== +# +# An asymmetric function to retrieve a MYSPE species + +students <- read.csv("../BCH441-2020-students.csv") + +sN <- students$Student.Number +range(sN) +any(duplicated(gsub(".+(.......)$", "\\1", sN))) + +N <- 7 +x <- numeric(N) +for (i in 1:N) { + x[i] <- H(substr(gsub(".+(.......)$", "\\1", sN), i, i)) +} +plot(x, col = "#BB0000", type = "b") + +keys <- as.numeric(gsub(".+(....).$", "\\1", sN)) +any(duplicated(keys)) + +# ===== +set.seed(112358) +names(sN) <- sample(1:nrow(sDat), length(sN)) + +MYSPEmap <- data.frame(keys = sprintf("%04d", 0:9999), + iMYSPE = sample(1:nrow(sDat), 10000, replace = TRUE)) +rownames(MYSPEmap) <- MYSPEmap$keys + +for (i in 1:length(sN)) { + rMap <- gsub(".+(....).$", "\\1", sN[i]) + MYSPEmap[rMap, "iMYSPE"] <- as.integer(names(sN)[i]) +} + +# saveRDS(MYSPEmap, "./data/MYSPEmap.rds") + +getMYSPE <- function(x) { + dat <- readRDS("./data/sDat.rds") + map <- readRDS("./data/MYSPEmap.rds") + key <- gsub(".+(....).$", "\\1", x) + return(dat$species[map[key, "iMYSPE"]]) +} + +# === validate +l <- length(sN) +sp <- character(l) +for(i in 1:l) { + sp[i] <- getMYSPE(sN[i]) +} +any(duplicated(sp)) +length(unique(sp)) +which(! sDat$species %in% sp) # these can be assigned to late-comers + +# Done. # [END] diff --git a/scripts/ABC-makeScCCnet.R b/scripts/ABC-makeScCCnet.R index 54185e3..81d0a49 100644 --- a/scripts/ABC-makeScCCnet.R +++ b/scripts/ABC-makeScCCnet.R @@ -119,10 +119,10 @@ scCCnet <- scCCnet[! duplicated(x), ] # length(unique(c(mySubnet$protein1, mySubnet$protein2))) # 261, no change # Network has 261 nodes, 1280 edges -save(scCCnet, file = "./data/scCCnet.RData") +saveRDS(scCCnet, file = "./data/scCCnet.rds") -# load("./data/scCCnet.RData") # <<<- use this to load the object when - # needed +# scCCnet <- readRDS("./data/scCCnet.rds") # <<<- use this to restore the + # object when needed # [END] diff --git a/scripts/BLAST.R b/scripts/BLAST.R index 80fd7bd..eb715af 100644 --- a/scripts/BLAST.R +++ b/scripts/BLAST.R @@ -4,23 +4,23 @@ # This script uses the BLAST URL-API # (Application Programming Interface) at the NCBI. # Read about the constraints here: -# https://ncbi.github.io/blast-cloud/dev/api.html +# https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=DeveloperInfo # # -# Version: 3.1 -# Date: 2016 09 - 2019 01 +# Version: 3.2 +# Date: 2016 09 - 2020 09 # Author: Boris Steipe # # Versions: +# 3.2 2020 updates # 3.1 Change from require() to requireNamespace(), # use ::() idiom throughout -# 3 parsing logic had not been fully implemented; Fixed. +# 3.0 parsing logic had not been fully implemented; Fixed. # 2.1 bugfix in BLAST(), bug was blanking non-split deflines; # refactored parseBLASTalignment() to handle lists with multiple hits. # 2.0 Completely rewritten because the interface completely changed. # Code adpated in part from NCBI Perl sample code: # $Id: web_blast.pl,v 1.10 2016/07/13 14:32:50 merezhuk Exp $ -# # 1.0 first version posted for BCH441 2016, based on BLAST - API # # ToDo: @@ -31,47 +31,50 @@ # ============================================================================== -if (! requireNamespace(httr, quietly = TRUE)) { +if (! requireNamespace("httr", quietly = TRUE)) { install.packages("httr") } -BLAST <- function(q, +BLAST <- function(Q, db = "refseq_protein", nHits = 30, E = 0.1, limits = "", rid = "", + query = "", quietly = FALSE, myTimeout = 120) { # Purpose: # Basic BLAST search # # Parameters: - # q: query - either a valid ID or a sequence + # Q: query - either a valid ID or a sequence # db: "refseq_protein" by default, - # other legal valuses include: "nr", "pdb", "swissprot" ... + # other legal values include: "nr", "pdb", "swissprot" ... # nHits: number of hits to maximally return # E: E-value cutoff. Do not return hits whose score would be expected # to occur E or more times in a database of random sequence. # limits: a valid ENTREZ filter - # rid: a request ID - to retrieve earleir search results + # rid: a request ID - to retrieve earlier search results + # query: the actual query string (needed when retrieving results + # with an rid) # quietly: controls printing of wait-time progress bar # timeout: how much longer _after_ rtoe to wait for a result # before giving up (seconds) # Value: - # result: list of resulting hits and some metadata + # result: list of process status or resulting hits, and some metadata EXTRAWAIT <- 10 # duration of extra wait cycles if BLAST search is not done results <- list() + results$query = query results$rid <- rid results$rtoe <- 0 - if (rid == "") { # if rid is not the empty string we skip the - # initial search and and proceed directly to retrieval - + if (rid == "") { # If no rid is available, spawn a search. + # Else, proceed directly to retrieval. # prepare query, GET(), and parse rid and rtoe from BLAST server response results$query <- paste0("https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi", @@ -141,7 +144,8 @@ BLAST <- function(q, if (myTimeout <= 0) { # abort cat("BLAST search not concluded before timeout. Aborting.\n") - cat(sprintf("You could check back later with rid \"%s\"\n", + cat(sprintf("%s BLASThits <- BLAST(rid=\"%s\")\n", + "Trying checking back later with >", results$rid)) return(results) } @@ -370,7 +374,7 @@ if (FALSE) { nHits = 100, E = 0.001, rid = "", - limits = "txid4751[ORGN]") + limits = "txid4751[ORGN]") # Fungi str(test) length(test$hits) }