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First minor updates 2021

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plottingReference.R
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# Purpose: Reference to graphical output in R.
#
#
# Version: 2.0
# Version: 2.1
#
# Date: 2017 09 - 2020 10
# Date: 2017 09 - 2021 09
# Author: Boris Steipe (boris.steipe@utoronto.ca)
#
# V 2.1 First minor updates 2021
# V 2.0 Comprehensive reference with basic and advanced options based on
# an integrated yeast gene expression dataset. Full rewrite of most
# sections.
# V 1.1 Stylistic improvements, code polish, and additional examples
# V 1.0 Digest from "plotting reference" files
#
# ToDo:
# ToDo: Demo 6.3.2 in parallel plots
#
#
@ -22,44 +23,45 @@
#TOC> ==========================================================================
#TOC>
#TOC> Section Title Line
#TOC> ------------------------------------------------------------------
#TOC> 01 INITIALIZE 67
#TOC> 02 THIS REFERENCE ... 72
#TOC> 02.1 Dataset Documentation 79
#TOC> 03 PROPORTIONS AND DISTRIBUTIONS 191
#TOC> 03.1 barplot() 196
#TOC> 03.2 pie() 220
#TOC> 03.3 boxplot() 252
#TOC> 03.4 hist() 310
#TOC> 03.4.1 overlaying histograms 355
#TOC> 04 THE plot() FUNCTION 398
#TOC> 04.1 line plots 402
#TOC> 05 ENCODING INFORMATION: SYMBOL, SIZE, COLOR 501
#TOC> 05.1 pch ("plotting character" symbols) 507
#TOC> 05.1.1 Line types 682
#TOC> 06 COLOUR 704
#TOC> 06.1 Colours by number 712
#TOC> 06.2 Colours by name 730
#TOC> 06.3 Colours as hex-triplets 756
#TOC> 06.3.1 Inbuilt palettes 811
#TOC> 06.3.2 Custom palettes 887
#TOC> 06.3.3 Transparency: The Alpha Channel 937
#TOC> 06.4 abline(), lines() and segments() 983
#TOC> 07 AXES 1017
#TOC> 08 LEGENDS 1054
#TOC> 08.1 basic legends 1057
#TOC> 08.2 Color bars 1061
#TOC> 09 LAYOUT 1180
#TOC> 10 TEXT 1215
#TOC> 11 DRAWING ON PLOTS 1243
#TOC> 12 IMAGES 1310
#TOC> 13 CONTOUR LINES 1315
#TOC> 14 3D PLOTS 1320
#TOC> 15 GRAPHS AND NETWORKS 1325
#TOC> 16 OTHER GRPAHICS PACKAGES 1330
#TOC> 17 INTERACTIVE PLOTS 1354
#TOC> 17.1 locator() 1358
#TOC> 17.2 plotly:: 1361
#TOC> -------------------------------------------------------------------
#TOC> 01 INITIALIZE 69
#TOC> 02 THIS REFERENCE ... 74
#TOC> 02.1 Dataset Documentation 81
#TOC> 03 PROPORTIONS AND DISTRIBUTIONS 193
#TOC> 03.1 barplot() 198
#TOC> 03.2 pie() 222
#TOC> 03.3 boxplot() 254
#TOC> 03.4 hist() 312
#TOC> 03.4.1 overlaying histograms 357
#TOC> 04 THE plot() FUNCTION 400
#TOC> 04.1 line plots 404
#TOC> 05 ENCODING INFORMATION: SYMBOL, SIZE, COLOuR 503
#TOC> 05.1 pch ("plotting character" symbols) 509
#TOC> 05.1.1 Line types 684
#TOC> 05.2 cex ("character expansion" size) 708
#TOC> 06 COLOUR 768
#TOC> 06.1 Colours by number 776
#TOC> 06.2 Colours by name 794
#TOC> 06.3 Colours as hex-triplets 820
#TOC> 06.3.1 Inbuilt palettes 875
#TOC> 06.3.2 Custom palettes 952
#TOC> 06.3.3 Transparency: The Alpha Channel 1002
#TOC> 06.4 abline(), lines() and segments() 1047
#TOC> 07 AXES 1081
#TOC> 08 LEGENDS 1118
#TOC> 08.1 basic legends 1121
#TOC> 08.2 Color bars 1125
#TOC> 09 LAYOUT 1246
#TOC> 10 TEXT 1281
#TOC> 11 DRAWING ON PLOTS 1309
#TOC> 12 IMAGES 1376
#TOC> 13 CONTOUR LINES 1381
#TOC> 14 3D PLOTS 1386
#TOC> 15 GRAPHS AND NETWORKS 1391
#TOC> 16 OTHER GRPAHICS PACKAGES 1396
#TOC> 17 INTERACTIVE PLOTS 1420
#TOC> 17.1 locator() 1424
#TOC> 17.2 plotly:: 1427
#TOC>
#TOC> ==========================================================================
@ -703,7 +705,7 @@ for (i in 1:10) {
# == 05.1 cex ("character expansion" size) =============================
# == 05.2 cex ("character expansion" size) =================================
# The size of characters can be controlled with the cex parameter. cex takes a
# vector of numbers, mapped to the vecors of plotted elements. The usual R