diff --git a/RPR-FASTA.R b/RPR-FASTA.R index a993923..6861439 100644 --- a/RPR-FASTA.R +++ b/RPR-FASTA.R @@ -4,12 +4,13 @@ # Purpose: A Bioinformatics Course: # R code accompanying the RPR-FASTA unit. # -# Version: 1.1.1 +# Version: 1.1.2 # -# Date: 2017-10 - 2020-09 +# Date: 2017-10 - 2021-09 # Author: Boris Steipe (boris.steipe@utoronto.ca) # # Versions: +# 1.1.2 style update # 1.1.1 bugfix - wrong function name # 1.1 2020 Maintenance. Rewrite validation logic. Add data # to utilities. Define AACOLS @@ -30,7 +31,7 @@ #TOC> ========================================================================== -#TOC> +#TOC> #TOC> Section Title Line #TOC> ----------------------------------------------------- #TOC> 1 Reading and validating FASTA 45 @@ -38,7 +39,7 @@ #TOC> 2 Parsing FASTA 227 #TOC> 3 Interpreting FASTA 247 #TOC> 4 Writing FASTA 274 -#TOC> +#TOC> #TOC> ========================================================================== @@ -56,7 +57,8 @@ faMBP1 <- readLines("./data/S288C_YDL056W_MBP1_coding.fsa") # The warning is generated because the programmer at the NCBI who implemented # the code to write this FASTA file neglected to place a line-break character # after the last sequence character. While this is not technically incorrect, -# it is poor practice. +# it is poor practice: the resulting file can't be distinguished from one that +# has been truncated in transmission. head(faMBP1)