From 3173aec1192bc8d2c6fa2be401bd22f6172b102e Mon Sep 17 00:00:00 2001 From: hyginn Date: Fri, 2 Oct 2020 18:38:01 +1000 Subject: [PATCH] srsly: ./myScripts/ ! --- BIN-ALI-Optimal_sequence_alignment.R | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/BIN-ALI-Optimal_sequence_alignment.R b/BIN-ALI-Optimal_sequence_alignment.R index 32e6b2c..b981f05 100644 --- a/BIN-ALI-Optimal_sequence_alignment.R +++ b/BIN-ALI-Optimal_sequence_alignment.R @@ -269,10 +269,10 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1 # # # You DON'T already have a file called "-Annotations.json" in the -# ./data/ directory: +# ./myScripts/ directory: # # - Make a copy of the file "./data/refAnnotations.json" and put it in your -# project directory. +# myScripts/ directory. # # - Give it a name that is structured like "-Annotations.json" - e.g. # if MYSPE is called "Crptycoccus neoformans", your file should be called @@ -297,7 +297,7 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1 # ## - Validate your file online at https://jsonlint.com/ # -# - Update your "makeProteinDB.R" script to load your new +# - Update your "./myScripts/makeProteinDB.R" script to load your new # annotation when you recreate the database. Open the script in the # RStudio editor, and add the following command at the end: # @@ -314,7 +314,7 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1 # # # You DO already have a file called "-Annotations.json" in the -# ./data/ directory: +# ./myScripts/ directory: # # - Open the file in the RStudio editor. # @@ -338,7 +338,7 @@ aliApses@subject@range@start + aliApses@subject@range@width - 1 # # - source() your database creation script: # -# source("makeProteinDB.R") +# source("./myScripts/makeProteinDB.R") # # This should run without errors or warnings. If it doesn't work and you # can't figure out quickly what's happening, ask on the mailing list for