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hyginn 2017-11-12 04:38:15 -05:00
parent c93b6df235
commit 28be433b83
1 changed files with 6 additions and 6 deletions
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12
RPR-SX-PDB.R
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@ -15,7 +15,7 @@
# 0.1 First code copied from 2016 material. # 0.1 First code copied from 2016 material.
# #
# TODO: # TODO:
# # Confirm that SS residue numbers are indices
# #
# == DO NOT SIMPLY source() THIS FILE! ======================================= # == DO NOT SIMPLY source() THIS FILE! =======================================
# #
@ -27,7 +27,7 @@
#TOC> ========================================================================== #TOC> ==========================================================================
#TOC> #TOC>
#TOC> Section Title Line #TOC> Section Title Line
#TOC> ---------------------------------------------------- #TOC> ----------------------------------------------------
#TOC> 1 Introduction to the bio3D package 63 #TOC> 1 Introduction to the bio3D package 63
@ -42,7 +42,7 @@
#TOC> 3.4.3 ... as a perspective plot 381 #TOC> 3.4.3 ... as a perspective plot 381
#TOC> 4 cis-peptide bonds 399 #TOC> 4 cis-peptide bonds 399
#TOC> 5 H-bond lengths 414 #TOC> 5 H-bond lengths 414
#TOC> #TOC>
#TOC> ========================================================================== #TOC> ==========================================================================
@ -325,7 +325,7 @@ str(dPhiPsi)
contour(dPhiPsi) contour(dPhiPsi)
# === 3.4.1 ... as overlay on a colored grid # === 3.4.1 ... as overlay on a colored grid
image(dPhiPsi, image(dPhiPsi,
col = myColorRamp(100), col = myColorRamp(100),
@ -342,7 +342,7 @@ abline(h = 0, lwd = 0.5, col = "#00000044")
abline(v = 0, lwd = 0.5, col = "#00000044") abline(v = 0, lwd = 0.5, col = "#00000044")
# === 3.4.2 ... as filled countour # === 3.4.2 ... as filled countour
filled.contour(dPhiPsi, filled.contour(dPhiPsi,
xlim = c(-180, 180), ylim = c(-180, 180), xlim = c(-180, 180), ylim = c(-180, 180),
@ -373,7 +373,7 @@ filled.contour(dPhiPsi,
abline(v = 0, lwd = 0.5, col = "#00000044") abline(v = 0, lwd = 0.5, col = "#00000044")
}) })
# === 3.4.3 ... as a perspective plot # === 3.4.3 ... as a perspective plot
persp(dPhiPsi, persp(dPhiPsi,
xlab = "phi", xlab = "phi",