Removed lock-out message
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55a0d18a66
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052e148999
@ -1,6 +1,6 @@
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# tocID <- "./.utilities.R"
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#
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# Miscellaneous R code to suppport the project
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# Miscellaneous R code to support the project
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#
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# Version: 1.4
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# Date: 2017-09 - 2020-09
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@ -574,7 +574,7 @@ selectPDBrep <- function(n, forCredit = FALSE) {
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seed <- as.integer(Sys.time())
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cat("NOTE: This selection will not validate for a course submission.\n")
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cat(" If you intend to use it for an assignment task, invoke\n")
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cat(" this function like \"selectPDBrep(n, forCredit = TRUE)\".\n\n")
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cat(" it like \"selectPDBrep(n = 15, forCredit = TRUE)\".\n\n")
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}
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pdbRep <- readRDS("./data/pdbRep.rds") # loads pdbRep
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30
RPR-SX-PDB.R
30
RPR-SX-PDB.R
@ -1,11 +1,5 @@
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# tocID <- "RPR-SX-PDB.R"
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#
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# ---------------------------------------------------------------------------- #
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# PATIENCE ... #
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# Do not yet work wih this code. Updates in progress. Thank you. #
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# boris.steipe@utoronto.ca #
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# ---------------------------------------------------------------------------- #
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#
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# Purpose: A Bioinformatics Course:
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# R code accompanying the RPR-SX-PDB unit.
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#
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@ -41,18 +35,18 @@
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#TOC>
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#TOC> Section Title Line
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#TOC> ----------------------------------------------------------
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#TOC> 1 Introduction to the bio3D package 62
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#TOC> 2 A Ramachandran plot 153
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#TOC> 3 Density plots 229
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#TOC> 3.1 Density-based colours 243
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#TOC> 3.2 Plotting with smoothScatter() 262
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#TOC> 3.3 Plotting hexbins 277
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#TOC> 3.4 Plotting density contours 305
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#TOC> 3.4.1 ... as overlay on a coloured grid 338
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#TOC> 3.4.2 ... as filled countour 355
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#TOC> 3.4.3 ... as a perspective plot 386
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#TOC> 4 cis-peptide bonds 404
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#TOC> 5 H-bond lengths 419
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#TOC> 1 Introduction to the bio3D package 63
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#TOC> 2 A Ramachandran plot 155
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#TOC> 3 Density plots 231
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#TOC> 3.1 Density-based colours 245
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#TOC> 3.2 Plotting with smoothScatter() 264
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#TOC> 3.3 Plotting hexbins 279
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#TOC> 3.4 Plotting density contours 307
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#TOC> 3.4.1 ... as overlay on a coloured grid 340
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#TOC> 3.4.2 ... as filled countour 357
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#TOC> 3.4.3 ... as a perspective plot 388
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#TOC> 4 cis-peptide bonds 406
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#TOC> 5 H-bond lengths 421
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#TOC>
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#TOC> ==========================================================================
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