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bugfix - wrong function name

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hyginn
2020-11-13 15:38:08 +10:00
parent 33ba40a252
commit 02ea110fe2
1 changed files with 10 additions and 8 deletions
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18
RPR-FASTA.R
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@@ -4,12 +4,13 @@
# Purpose: A Bioinformatics Course: # Purpose: A Bioinformatics Course:
# R code accompanying the RPR-FASTA unit. # R code accompanying the RPR-FASTA unit.
# #
# Version: 1.1 # Version: 1.1.1
# #
# Date: 2017-10 - 2020-09 # Date: 2017-10 - 2020-09
# Author: Boris Steipe (boris.steipe@utoronto.ca) # Author: Boris Steipe (boris.steipe@utoronto.ca)
# #
# Versions: # Versions:
# 1.1.1 bugfix - wrong function name
# 1.1 2020 Maintenance. Rewrite validation logic. Add data # 1.1 2020 Maintenance. Rewrite validation logic. Add data
# to utilities. Define AACOLS # to utilities. Define AACOLS
# 1.0 New unit. # 1.0 New unit.
@@ -32,11 +33,11 @@
#TOC> #TOC>
#TOC> Section Title Line #TOC> Section Title Line
#TOC> ----------------------------------------------------- #TOC> -----------------------------------------------------
#TOC> 1 Reading and validating FASTA 44 #TOC> 1 Reading and validating FASTA 45
#TOC> 1.1 Validating FASTA 80 #TOC> 1.1 Validating FASTA 81
#TOC> 2 Parsing FASTA 225 #TOC> 2 Parsing FASTA 227
#TOC> 3 Interpreting FASTA 245 #TOC> 3 Interpreting FASTA 247
#TOC> 4 Writing FASTA 272 #TOC> 4 Writing FASTA 274
#TOC> #TOC>
#TOC> ========================================================================== #TOC> ==========================================================================
@@ -215,12 +216,13 @@ FA <- c(">head1",
">head3", ">head3",
"mn", "mn",
"pqrs") "pqrs")
validate(FA) # ... should not create an error val(FA) # ... should not create an error
# A somewhat more elaborate validateFA() function was loaded with the # A somewhat more elaborate validateFA() function was loaded with the
# ./utilities.R script. It needs a bit more bookkeeping, since NCBI multi- # ./utilities.R script. It needs a bit more bookkeeping, since NCBI multi-
# fasta files have space-characters in their spacer lines. # fasta files have space-characters in their spacer lines. Try it ...
validateFA(FA)
# = 2 Parsing FASTA ======================================================= # = 2 Parsing FASTA =======================================================