diff --git a/Jenkinsfile b/Jenkinsfile index 7f00ab3..b62549d 100644 --- a/Jenkinsfile +++ b/Jenkinsfile @@ -10,9 +10,11 @@ pipeline { stages { stage ("install") { steps { + sh 'useradd galaxy -m' + sh 'apt update' + sh 'apt install sudo -y' sh 'pip install -r requirements.txt' sh 'pip install standard-imghdr' - sh 'useradd galaxy -m' } } stage ("lint") { @@ -23,7 +25,7 @@ pipeline { stage ("test") { steps { sh 'mkdir test_results' - sh "planemo test autobigs-cli.xml --test_output_junit test_results/junit_results.xml --test_output_json test_results/results.json --test_output test_results/human.html" + sh "sudo -u galaxy planemo test autobigs-cli.xml --test_output_junit test_results/junit_results.xml --test_output_json test_results/results.json --test_output test_results/human.html" xunit checksName: '', tools: [JUnit(excludesPattern: '', pattern: 'test_results/junit_report.xml', stopProcessingIfError: true)] } }