ydeng/autoBIGS.galaxy
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Changed all commands to be run by the galaxy user
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Harrison Deng 2025-02-24 15:28:31 +00:00
parent 40f49a48ac
commit bb1a7dfe38
1 changed files with 5 additions and 5 deletions
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10
Jenkinsfile vendored
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@ -11,15 +11,15 @@ pipeline {
stage ("install") { stage ("install") {
steps { steps {
sh 'useradd galaxy -m' sh 'useradd galaxy -m'
sh 'apt update' sh 'apt-get update'
sh 'apt install sudo -y' sh 'apt-get install sudo -y'
sh 'pip install -r requirements.txt' sh 'sudo -u galaxy pip install -r requirements.txt'
sh 'pip install standard-imghdr' sh 'sudo -u galaxy pip install standard-imghdr'
} }
} }
stage ("lint") { stage ("lint") {
steps { steps {
sh "planemo lint autobigs-cli.xml" sh "sudo -u galaxy planemo lint autobigs-cli.xml"
} }
} }
stage ("test") { stage ("test") {