Changed to miniforge environment
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8
Jenkinsfile
vendored
8
Jenkinsfile
vendored
@@ -2,19 +2,19 @@ pipeline {
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agent {
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kubernetes {
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cloud 'rsys-devel'
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defaultContainer 'pip'
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inheritFrom 'pip'
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defaultContainer 'miniforge3'
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inheritFrom 'miniforge'
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}
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}
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stages {
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stage ("install") {
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steps {
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sh 'conda install python==3.12.7 pip -y -q'
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sh 'useradd galaxy -m'
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sh 'apt-get update'
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sh 'apt-get install sudo -y'
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sh 'sudo -u galaxy pip install -r requirements.txt'
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sh 'sudo -u galaxy pip install standard-imghdr'
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sh 'pip install -r requirements.txt'
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}
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}
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stage ("lint") {
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