Changed development server publication condition

Jenkinsfile

@@ -36,7 +36,9 @@ pipeline {
             parallel {
                 stage ("git.reslate.systems") {
                     when {
-                        branch '**/main'
+                        not {
+                            tag '*.*.*'
+                        }
                     }
 
                     environment {
@@ -49,7 +51,7 @@ pipeline {
                 }
                 stage ("pypi.org") {
                     when {
-                        tag '*.*'
+                        tag '*.*.*'
                     }
                     environment {
                         TOKEN = credentials('pypi.org')

autobigs-engine/meta.yaml

@@ -1,44 +0,0 @@
-{% set name = "autoBIGS.engine" %}
-{% set version = "0.12.1.dev1+gb8cebb8.d20250221" %}
-
-package:
-  name: {{ name|lower|replace(".", "-") }}
-  version: {{ version }}
-
-source:
-  url: file:///workspaces/autoBIGS.engine/dist/autobigs_engine-0.12.1.dev1%2Bgb8cebb8.d20250221.tar.gz
-  sha256: c86441b94f935cfa414ff28ca4c026a070e0fb15988ea3bb7d1a942859a09b16
-
-build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
-  number: 0
-  run_exports:
-    - {{ pin_subpackage( name|lower|replace(".", "-"), max_pin="x.x") }}
-requirements:
-  host:
-    - python >=3.12
-    - setuptools >=64
-    - setuptools-scm >=8
-    - pip
-  run:
-    - python >=3.12
-    - biopython ==1.85
-    - aiohttp ==3.11.*
-
-test:
-  imports:
-    - autobigs
-  commands:
-    - pip check
-  requires:
-    - pip
-
-about:
-  summary: A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
-  license: GPL-3.0-or-later
-  license_file: LICENSE
-  home: https://github.com/Syph-and-VPD-Lab/autoBIGS.engine
-extra:
-  recipe-maintainers:
-    - Harrison Deng

src/autobigs/engine/reading.py

@@ -1,5 +1,6 @@
 import asyncio
 from io import TextIOWrapper
+from os import path
 from typing import Any, AsyncGenerator, Iterable, Union
 from Bio import SeqIO
 
@@ -9,7 +10,7 @@ async def read_fasta(handle: Union[str, TextIOWrapper]) -> Iterable[NamedString]
     fasta_sequences = asyncio.to_thread(SeqIO.parse, handle=handle, format="fasta")
     results = []
     for fasta_sequence in await fasta_sequences:
-        results.append(NamedString(fasta_sequence.id, str(fasta_sequence.seq)))
+        results.append(NamedString("{0}:{1}".format(path.basename(handle.name if isinstance(handle, TextIOWrapper) else handle), fasta_sequence.id), str(fasta_sequence.seq)))
     return results
 
 async def read_multiple_fastas(handles: Iterable[Union[str, TextIOWrapper]]) -> AsyncGenerator[Iterable[NamedString], Any]:

tests/autobigs/engine/test_reading.py

@@ -4,4 +4,9 @@ from autobigs.engine.reading import read_fasta
 async def test_fasta_reader_not_none():
     named_strings = await read_fasta("tests/resources/tohama_I_bpertussis.fasta")
     for named_string in named_strings:
-        assert named_string.name == "BX470248.1"
+        assert named_string.name is not None
+
+async def test_fasta_reader_name_contains_file_and_id():
+    named_strings = await read_fasta("tests/resources/tohama_I_bpertussis.fasta")
+    for named_string in named_strings:
+        assert named_string.name == "tohama_I_bpertussis.fasta:BX470248.1"