32 Commits

Author SHA1 Message Date
341ca933a3 Fixed typo in CI script 2025-01-29 17:00:25 +00:00
3e3898334f Began implementing LazyPersistentCachedBIGSdbMLSTProfiler 2025-01-27 22:03:49 +00:00
6d0157581f Removed conda environment step for now 2025-01-24 21:43:55 +00:00
4bcbfa0c6a Began adding conda steps for automatic PRs to Bioconda 2025-01-24 19:33:27 +00:00
1372141b57 Fixed typo in Jenkinsfile 2025-01-22 20:30:55 +00:00
677c5e1aa8 Revert "Reapply "Began preparing for conda deployment""
This reverts commit ade2f3b84572b4356d404da2dbcd1d7266f10205.
2025-01-22 18:29:37 +00:00
53e74af20a Refactoring project name to autoBIGSst.engine 2025-01-22 18:24:04 +00:00
ade2f3b845 Reapply "Began preparing for conda deployment"
This reverts commit 3bbef9ac3e0ca58f6f5f62a1e9bd1d8ae02fd75c.
2025-01-20 19:56:51 +00:00
c2c6d0b016 Changed package publishing on git.reslate.systems back to username and password authentication 2025-01-20 19:04:44 +00:00
3bbef9ac3e Revert "Began preparing for conda deployment"
This reverts commit fe797be34f5c2e77cdde00acfd32eeaaab259f2b.
2025-01-20 17:52:29 +00:00
660d803c9e Updated to not regenerate build recipe each time during CI 2025-01-20 17:28:42 +00:00
cb3aec554e Added git author information as environment variables 2025-01-20 17:04:45 +00:00
05e132c066 Updated pipeline to refer to python module correctly 2025-01-20 16:54:00 +00:00
de36956cc0 Updating kubernetes definitions to match CI server 2025-01-20 16:26:11 +00:00
fe797be34f Began preparing for conda deployment 2025-01-17 21:31:38 +00:00
ab44dfaa48 Publish to pypi if it has a release tag 2025-01-17 15:13:47 +00:00
bad7dfc3a8 Changing all publishing steps to use API keys 2025-01-16 21:29:20 +00:00
4fe0f0f287 Added stage for publishing to test.pypi.org when the tag a version number. 2025-01-16 21:22:49 +00:00
206a105bf9 Rermoved publishing branch and tag conditions, publish errors are no longer considered failures 2025-01-10 17:59:04 +00:00
ad082b8af6 Revert "Always publish on build success"
This reverts commit cc6a7563cafc15686e61810da6c412f27c82c1c8.
2025-01-10 17:43:14 +00:00
5118a25b6a publish step will now fail if twine upload fails 2025-01-10 17:41:42 +00:00
cc6a7563ca Always publish on build success 2025-01-10 17:35:58 +00:00
484e31879e Removed test installation step from CI 2025-01-10 17:28:25 +00:00
e60dba936c Added a tag name check for publishing 2025-01-09 18:32:51 +00:00
7bd28db6d4 Updated code coverage to only report on source code 2025-01-09 16:51:08 +00:00
1d531aff42 Updated CI to only report on automlst and fixed report publishing 2025-01-09 16:08:30 +00:00
8febfad282 Added publishing of coverage results 2025-01-09 15:55:39 +00:00
42bcfcf61d Added coverage tracking 2025-01-09 15:54:22 +00:00
b32a522e39 Removed python version selector in CI for test step 2025-01-09 07:52:31 +00:00
e3047d60d7 Removed version selector for python 2025-01-09 07:45:19 +00:00
b893d853a7 Changing pipeline to use pip container instead of homebrew 2025-01-09 07:43:20 +00:00
02985d5e37 Copied over most code from another of my projects 2025-01-08 15:14:06 +00:00