Changed allele CSV output to non-lists

This commit is contained in:
Harrison Deng 2025-01-17 16:56:52 +00:00
parent ab44dfaa48
commit e7c8c5bcf9
2 changed files with 18 additions and 6 deletions

View File

@ -1,7 +1,6 @@
import csv
from io import TextIOWrapper
from os import PathLike
from typing import AsyncIterable, Iterable, Mapping, Sequence, Union
from typing import AsyncIterable, Mapping, Sequence, Union
from automlst.engine.data.structures.mlst import Allele, MLSTProfile
@ -11,6 +10,7 @@ def dict_loci_alleles_variants_from_loci(alleles_map: Mapping[str, Sequence[Alle
for loci, alleles in alleles_map.items():
if len(alleles) == 1:
result_dict[loci] = alleles[0].allele_variant
else:
for allele in alleles:
result_locis = list()
result_locis.append(allele.allele_variant)

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@ -0,0 +1,12 @@
from automlst.engine.data.local.csv import dict_loci_alleles_variants_from_loci
from automlst.engine.data.structures.mlst import Allele
def test_dict_loci_alleles_variants_from_loci_single_loci_not_list():
alleles_map = {
"adk": [Allele("adk", "1", None)]
}
results = dict_loci_alleles_variants_from_loci(alleles_map)
for loci, variant in results.items():
assert isinstance(variant, str)
assert variant == "1"