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Fixed issue where multiple allele identifiers were not returned in output.

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This commit is contained in:
Harrison Deng 2025-01-17 17:04:22 +00:00
parent e7c8c5bcf9
commit b89f24a3fa
2 changed files with 11 additions and 2 deletions
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2
src/automlst/engine/data/local/csv.py
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@ -11,8 +11,8 @@ def dict_loci_alleles_variants_from_loci(alleles_map: Mapping[str, Sequence[Alle
if len(alleles) == 1: if len(alleles) == 1:
result_dict[loci] = alleles[0].allele_variant result_dict[loci] = alleles[0].allele_variant
else: else:
result_locis = list()
for allele in alleles: for allele in alleles:
result_locis = list()
result_locis.append(allele.allele_variant) result_locis.append(allele.allele_variant)
result_dict[loci] = result_locis result_dict[loci] = result_locis
return result_dict return result_dict

11
tests/automlst/engine/data/local/test_csv.py
View File

@ -9,4 +9,13 @@ def test_dict_loci_alleles_variants_from_loci_single_loci_not_list():
results = dict_loci_alleles_variants_from_loci(alleles_map) results = dict_loci_alleles_variants_from_loci(alleles_map)
for loci, variant in results.items(): for loci, variant in results.items():
assert isinstance(variant, str) assert isinstance(variant, str)
assert variant == "1" assert variant == "1"
def test_dict_loci_alleles_variants_from_loci_multi_loci_is_list():
alleles_map = {
"adk": [Allele("adk", "1", None), Allele("adk", "2", None)]
}
results = dict_loci_alleles_variants_from_loci(alleles_map)
for loci, variant in results.items():
assert isinstance(variant, list)
assert len(variant) == 2