From a60daf3ee24ff106d70559b1e62f222f8619d7e7 Mon Sep 17 00:00:00 2001 From: Harrison Deng Date: Wed, 12 Feb 2025 16:39:13 +0000 Subject: [PATCH] Updated H. influenzae database API url --- tests/autobigs/engine/analysis/test_bigsdb.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/autobigs/engine/analysis/test_bigsdb.py b/tests/autobigs/engine/analysis/test_bigsdb.py index d689d65..90cec38 100644 --- a/tests/autobigs/engine/analysis/test_bigsdb.py +++ b/tests/autobigs/engine/analysis/test_bigsdb.py @@ -76,7 +76,7 @@ hinfluenzae_fdaargos_fragmented_sequence = tuple(SeqIO.parse("tests/resources/to @pytest.mark.parametrize("local_db,database_api,database_name,schema_id,seq_path,feature_seqs_path,expected_profile,bad_profile", [ (False, "https://bigsdb.pasteur.fr/api", "pubmlst_bordetella_seqdef", 3, "tohama_I_bpertussis.fasta", "tohama_I_bpertussis_features.fasta", bpertussis_tohamaI_profile, bpertussis_tohamaI_bad_profile), - (False, "https://bigsdb.pasteur.fr/api", "pubmlst_hinfluenzae_seqdef", 1, "fdaargos_1560_hinfluenza.fasta", "fdaargos_1560_hinfluenza_features.fasta", hinfluenzae_fdaargos_profile, hinfluenzae_fdaargos_bad_profile), + (False, "https://rest.pubmlst.org", "pubmlst_hinfluenzae_seqdef", 1, "fdaargos_1560_hinfluenza.fasta", "fdaargos_1560_hinfluenza_features.fasta", hinfluenzae_fdaargos_profile, hinfluenzae_fdaargos_bad_profile), ]) class TestBIGSdbMLSTProfiler: async def test_profiling_results_in_exact_matches_when_exact(self, local_db, database_api, database_name, schema_id, seq_path: str, feature_seqs_path: str, expected_profile: MLSTProfile, bad_profile: MLSTProfile):