ydeng/autoBIGS.engine
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Refactored code layout

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This commit is contained in:
Harrison Deng
2025-01-16 21:54:52 +00:00
parent bad7dfc3a8
commit a3c864b565
12 changed files with 9 additions and 30 deletions
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6
tests/automlst/engine/local/test_abif.py
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@@ -1,12 +1,8 @@
import os
from automlst.engine.local.abif import read_abif, reference_consensus_assembly
from automlst.engine.data.local.abif import read_abif
async def test_load_sanger_sequence_has_data():
assert os.path.exists("tests/resources/1I1_F_P1815443_047.ab1")
result_data = await read_abif("tests/resources/1I1_F_P1815443_047.ab1")
assert result_data is not None
async def test_consensus_assembly_with_ncbi():
consensus = reference_consensus_assembly("ON685494.1", [await read_abif("tests/resources/1I1_F_P1815443_047.ab1"), await read_abif("tests/resources/1I1_R_P1815443_094.ab1")])
# TODO complete implementing this