Refactoring project name to autoBIGSst.engine

tests/autobigsst/engine/data/local/test_csv.py

@@ -0,0 +1,21 @@
+from autobigsst.engine.data.local.csv import dict_loci_alleles_variants_from_loci
+from autobigsst.engine.data.structures.mlst import Allele
+
+
+def test_dict_loci_alleles_variants_from_loci_single_loci_not_list():
+    alleles_map = {
+        "adk": [Allele("adk", "1", None)]
+    }
+    results = dict_loci_alleles_variants_from_loci(alleles_map)
+    for loci, variant in results.items():
+        assert isinstance(variant, str)
+        assert variant == "1"
+
+def test_dict_loci_alleles_variants_from_loci_multi_loci_is_list():
+    alleles_map = {
+        "adk": [Allele("adk", "1", None), Allele("adk", "2", None)]
+    }
+    results = dict_loci_alleles_variants_from_loci(alleles_map)
+    for loci, variant in results.items():
+        assert isinstance(variant, list)
+        assert len(variant) == 2

tests/autobigsst/engine/data/local/test_fasta.py

@@ -0,0 +1,7 @@
+from autobigsst.engine.data.local.fasta import read_fasta
+
+
+async def test_fasta_reader_not_none():
+    named_strings = read_fasta("tests/resources/tohama_I_bpertussis.fasta")
+    async for named_string in named_strings:
+        assert named_string.name == "BX470248.1"