From 424beeb559cece6d319b2ec2d227f7d044f14485 Mon Sep 17 00:00:00 2001
From: Harrison Deng <yunyangdeng@outlook.com>
Date: Wed, 8 Jan 2025 16:55:55 +0000
Subject: [PATCH] Refactored CLI naming

---
 pyproject.toml           | 3 +--
 src/automlst/cli/root.py | 4 ++--
 2 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 7d357c1..0a09d92 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,8 +13,7 @@ requires-python = ">=3.11"
 description = "A tool to rapidly fetch fetch MLST profiles given sequences for various diseases."
 
 [project.scripts]
-automlst = "automlst.cli.root:cli"
-nsbdiagtk = "automlst.cli.root:cli"
+automlst = "automlst.cli.root:run"
 
 [tool.pyright]
 extraPaths = ["src"]
diff --git a/src/automlst/cli/root.py b/src/automlst/cli/root.py
index a1f9e69..0de7827 100644
--- a/src/automlst/cli/root.py
+++ b/src/automlst/cli/root.py
@@ -71,7 +71,7 @@ parser.add_argument(
 )
 
 
-def cli():
+def run():
     args = parser.parse_args()
     gen_strings = aggregated.aggregate_sequences(args.fastas, args.abifs)
     os.makedirs(args.out, exist_ok=True)
@@ -83,4 +83,4 @@ def cli():
 
 
 if __name__ == "__main__":
-    cli()
\ No newline at end of file
+    run()
\ No newline at end of file