ydeng/autoBIGS.engine
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Initial attempt at switching to a conda based build environment
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Harrison Deng
2025-02-21 05:37:56 +00:00
parent b8cebb8ba4
commit 2822a483e3
10 changed files with 202 additions and 175 deletions
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@@ -9,7 +9,7 @@ pipeline {
stages {
stage("install") {
steps {
sh 'python -m pip install -r requirements.txt'
sh 'conda env update -n base -f environment.yml'
}
}
stage("unit tests") {
@@ -22,11 +22,14 @@ pipeline {
stage("build") {
steps {
sh "python -m build"
sh "grayskull pypi dist/*.tar.gz --maintainers 'Harrison Deng'"
sh "python scripts/patch_recipe.py"
sh 'conda build autobigs-engine -c bioconda --output-folder conda-bld --verify'
}
}
stage("archive") {
steps {
archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl, conda-bld/**/*.conda', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
}
}
stage("publish") {
@@ -36,7 +39,8 @@ pipeline {
CREDS = credentials('username-password-rs-git')
}
steps {
sh returnStatus: true, script: 'python -m twine upload --repository-url https://git.reslate.systems/api/packages/ydeng/pypi -u ${CREDS_USR} -p ${CREDS_PSW} --non-interactive --disable-progress-bar --verbose dist/*'
sh 'python -m twine upload --repository-url https://git.reslate.systems/api/packages/ydeng/pypi -u ${CREDS_USR} -p ${CREDS_PSW} --non-interactive --disable-progress-bar --verbose dist/*'
sh 'curl --user ${CREDS_USR}:${CRED_PSW} --upload-file conda-bld/**/*.conda https://git.reslate.systems/api/packages/${CRED_USR}/conda/$(basename conda-bld/**/*.conda)'
}
}
stage ("pypi.org") {