ydeng/autoBIGS.engine
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Alleles IDs obtained from one sequence is named the ID of that sequence
Some checks failed
autoBIGS.engine/pipeline/head There was a failure building this commit
Details

Browse Source 
Instead of generating a tuple comprised of the one sequence ID repeated
This commit is contained in:
Harrison Deng 2025-02-26 06:15:56 +00:00
parent 6cdc4ff4ae
commit 17932ecd71
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
src/autobigs/engine/analysis/bigsdb.py
View File

@ -127,7 +127,7 @@ class RemoteBIGSdbMLSTProfiler(BIGSdbMLSTProfiler):
raise ValueError("Passed in no alleles.")
result_mlst_profile = MLSTProfile(allele_set, scheme_fields_returned["ST"], scheme_fields_returned["clonal_complex"])
if len(names_list) > 0:
result_mlst_profile = NamedMLSTProfile(str(tuple(names_list)), result_mlst_profile)
result_mlst_profile = NamedMLSTProfile(str(tuple(names_list)) if len(set(names_list)) > 1 else names_list[0], result_mlst_profile)
return result_mlst_profile
async def profile_string(self, query_sequence_strings: Iterable[Union[NamedString, str]]) -> Union[NamedMLSTProfile, MLSTProfile]: