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Alleles IDs obtained from one sequence is named the ID of that sequence
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Instead of generating a tuple comprised of the one sequence ID repeated
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Harrison Deng 2025-02-26 06:15:56 +00:00
parent 6cdc4ff4ae
commit 17932ecd71
1 changed files with 1 additions and 1 deletions
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src/autobigs/engine/analysis/bigsdb.py
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@ -127,7 +127,7 @@ class RemoteBIGSdbMLSTProfiler(BIGSdbMLSTProfiler):
raise ValueError("Passed in no alleles.") raise ValueError("Passed in no alleles.")
result_mlst_profile = MLSTProfile(allele_set, scheme_fields_returned["ST"], scheme_fields_returned["clonal_complex"]) result_mlst_profile = MLSTProfile(allele_set, scheme_fields_returned["ST"], scheme_fields_returned["clonal_complex"])
if len(names_list) > 0: if len(names_list) > 0:
result_mlst_profile = NamedMLSTProfile(str(tuple(names_list)), result_mlst_profile) result_mlst_profile = NamedMLSTProfile(str(tuple(names_list)) if len(set(names_list)) > 1 else names_list[0], result_mlst_profile)
return result_mlst_profile return result_mlst_profile
async def profile_string(self, query_sequence_strings: Iterable[Union[NamedString, str]]) -> Union[NamedMLSTProfile, MLSTProfile]: async def profile_string(self, query_sequence_strings: Iterable[Union[NamedString, str]]) -> Union[NamedMLSTProfile, MLSTProfile]: