Updated naming (again).

This commit is contained in:
2025-01-22 21:05:19 +00:00
parent 1372141b57
commit 1773bb9dcb
17 changed files with 20 additions and 20 deletions

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from autobigs.engine.data.local.csv import dict_loci_alleles_variants_from_loci
from autobigs.engine.data.structures.mlst import Allele
def test_dict_loci_alleles_variants_from_loci_single_loci_not_list():
alleles_map = {
"adk": [Allele("adk", "1", None)]
}
results = dict_loci_alleles_variants_from_loci(alleles_map)
for loci, variant in results.items():
assert isinstance(variant, str)
assert variant == "1"
def test_dict_loci_alleles_variants_from_loci_multi_loci_is_list():
alleles_map = {
"adk": [Allele("adk", "1", None), Allele("adk", "2", None)]
}
results = dict_loci_alleles_variants_from_loci(alleles_map)
for loci, variant in results.items():
assert isinstance(variant, list)
assert len(variant) == 2

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from autobigs.engine.data.local.fasta import read_fasta
async def test_fasta_reader_not_none():
named_strings = read_fasta("tests/resources/tohama_I_bpertussis.fasta")
async for named_string in named_strings:
assert named_string.name == "BX470248.1"