Updated pipeline to refer to python module correctly

.devcontainer/devcontainer.json

@@ -20,7 +20,8 @@
 	"customizations": {
 		"vscode": {
 			"extensions": [
-				"mechatroner.rainbow-csv"
+				"mechatroner.rainbow-csv",
+				"piotrpalarz.vscode-gitignore-generator"
 			]
 		}
 	}

.gitignore

@@ -357,4 +357,5 @@ package
 # Custom rules (everything added below won't be overriden by 'Generate .gitignore File' if you use 'Update' option)
 
 output
-*.private.*
+*.private.*
+conda-bld

.vscode/extensions.json

@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "piotrpalarz.vscode-gitignore-generator"
+    ]
+}

Jenkinsfile

@@ -21,14 +21,14 @@ pipeline {
         }
         stage("build") {
             steps {
-                sh "build"
+                sh "python -m build"
                 sh "grayskull pypi dist/*.tar.gz"
-                sh "conda-build automlst.engine"
+                sh "conda-build automlst.engine --output-folder conda-bld"
             }
         }
         stage("archive") {
             steps {
-                archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
+                archiveArtifacts artifacts: 'dist/*.tar.gz, dist/*.whl conda-bld/**/*.conda', fingerprint: true, followSymlinks: false, onlyIfSuccessful: true
             }
         }
         stage("publish") {

automlst.engine/meta.yaml

@@ -1,43 +0,0 @@
-{% set name = "automlst.engine" %}
-{% set version = "0.5.2.dev0+gb89f24a.d20250117" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  url: file:///workspaces/automlst.engine/dist/automlst_engine-0.5.2.dev0%2Bgb89f24a.d20250117.tar.gz
-  sha256: 690465cbb8da3d104b87524e0cc48696e8be9e22fe83cdc59b64ababd9177c1f
-
-build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
-  number: 0
-
-requirements:
-  host:
-    - python >=3.11
-    - setuptools >=64
-    - setuptools-scm >=8
-    - pip
-  run:
-    - python >=3.11
-    - biopython
-    - aiohttp
-
-test:
-  imports:
-    - automlst
-  commands:
-    - pip check
-  requires:
-    - pip
-
-about:
-  summary: A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
-  license: GPL-3.0
-  license_file: LICENSE
-
-extra:
-  recipe-maintainers:
-    - RealYHD

automlst_engine/meta.yaml

@@ -1,43 +0,0 @@
-{% set name = "automlst_engine" %}
-{% set version = "0.1.1.dev21+g206a105.d20250116" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  url: file:///workspaces/automlst.engine/dist/automlst_engine-0.1.1.dev21+g206a105.d20250116.tar.gz
-  sha256: 42488314f72459563544a7e9cd2a6cbc34e7c11df478e42bf1f77bb4af3c7cdd
-
-build:
-  noarch: python
-  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
-  number: 0
-
-requirements:
-  host:
-    - python >=3.11
-    - setuptools >=64
-    - setuptools-scm >=8
-    - pip
-  run:
-    - python >=3.11
-    - biopython
-    - aiohttp
-
-test:
-  imports:
-    - automlst.engine
-  commands:
-    - pip check
-  requires:
-    - pip
-
-about:
-  summary: A tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
-  license: ''
-  license_file: PLEASE_ADD_LICENSE_FILE
-
-extra:
-  recipe-maintainers:
-    - RealYHD