allele profiling partial matching works

src/automlst/engine/data/mlst.py

@@ -1,13 +1,21 @@
 from dataclasses import dataclass
-from typing import Mapping, Sequence
+from typing import Mapping, Sequence, Union
+
+@dataclass(frozen=True)
+class PartialAllelicMatchProfile:
+    percent_identity: float
+    mismatches: int
+    bitscore: float
+    gaps: int
 
 @dataclass(frozen=True)
 class Allele:
     allele_loci: str
     allele_variant: str
+    partial_match_profile: Union[None, PartialAllelicMatchProfile]
 
 @dataclass(frozen=True)
 class MLSTProfile:
     alleles: Mapping[str, Sequence[Allele]]
     sequence_type: str
-    clonal_complex: str
+    clonal_complex: str