11 lines
484 B
Python
11 lines
484 B
Python
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import asyncio
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from io import TextIOWrapper
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from typing import Any, AsyncGenerator, Generator, Sequence, Union
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from Bio import SeqIO
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from automlst.engine.data.genomics import NamedString
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async def read_fasta(handle: Union[str, TextIOWrapper]) -> AsyncGenerator[NamedString, Any]:
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fasta_sequences = asyncio.to_thread(SeqIO.parse, handle=handle, format="fasta")
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for fasta_sequence in await fasta_sequences:
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yield NamedString(fasta_sequence.id, str(fasta_sequence.seq))
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