Harrison Deng
810ec0ee6a
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autoBIGS.engine-bioconda/pipeline/head There was a failure building this commit
80 lines
2.9 KiB
Groovy
80 lines
2.9 KiB
Groovy
pipeline {
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agent {
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kubernetes {
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cloud 'rsys-devel'
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defaultContainer 'miniforge3'
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inheritFrom 'miniforge'
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}
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}
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stages {
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stage("prepare") {
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parallel {
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stage("recipes repo") {
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steps {
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sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
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dir('auto-updated-bioconda-recipes') {
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sh 'git pull'
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sh 'git pull origin update-autobigs-engine'
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sh 'git checkout update-autobigs-engine'
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}
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}
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}
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stage("conda") {
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steps {
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sh 'conda env update -n base --file environment.yml'
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}
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}
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}
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}
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stage("generate recipe") {
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steps {
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sh 'grayskull pypi autoBIGS.engine --maintainers "Harrison Deng"'
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sh 'python patch_recipe.py'
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sh 'cp -r autobigs-engine/* auto-updated-bioconda-recipes/recipes/autobigs-engine/.'
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}
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}
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stage("lint") {
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
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}
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}
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}
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stage("build") {
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'conda build recipes/autobigs-engine --output-folder ./conda-dist'
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}
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}
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}
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stage('publish') {
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parallel {
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stage("archive") {
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steps {
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archiveArtifacts artifacts: './conda-dist/**/*.conda', followSymlinks: false
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}
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}
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stage("commit") {
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environment {
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TOKEN = credentials('github.com')
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}
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../pypi_latest_ver.py autoBIGS.engine)."'
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sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine'
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}
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}
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}
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stage('git.reslate.systems') {
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environment {
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AUTH = credentials('git.reslate.systems')
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}
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steps {
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sh
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sh 'curl --user AUTH_USR:AUTH_PSW --upload-file ./conda-dist/**/*.conda https://git.reslate.systems/api/packages/${AUTH_USR}/conda/package-1.0.conda'
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}
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}
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}
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}
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}
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} |