30 lines
895 B
Groovy
30 lines
895 B
Groovy
pipeline {
|
|
agent {
|
|
kubernetes {
|
|
cloud 'rsys-devel'
|
|
defaultContainer 'miniforge3'
|
|
inheritFrom 'miniforge'
|
|
}
|
|
}
|
|
stages {
|
|
stage("prepare") {
|
|
parallel {
|
|
stage("recipes repo") {
|
|
steps {
|
|
sh 'git clone https://github.com/RealYHD/bioconda-recipes.git'
|
|
dir('bioconda-recipes') {
|
|
sh 'git pull'
|
|
sh 'git pull origin update-autobigs-engine'
|
|
sh 'git pull origin update-autobigs-cli'
|
|
}
|
|
}
|
|
}
|
|
stage("conda") {
|
|
steps {
|
|
sh 'conda env update -n base --file environment.yml'
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
} |