From e8de40972a0f65fa9faca7aac1bc2f4f386c3182 Mon Sep 17 00:00:00 2001
From: Harrison Deng <yunyangdeng@outlook.com>
Date: Tue, 18 Feb 2025 14:17:31 +0000
Subject: [PATCH] Updated cloned directory names

---
 Jenkinsfile | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 330cf32..db5fb3f 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -12,7 +12,7 @@ pipeline {
                 stage("recipes repo") {
                     steps {
                         sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
-                        dir('bioconda-recipes') {
+                        dir('auto-updated-bioconda-recipes') {
                             sh 'git pull'
                             sh 'git pull origin update-autobigs-engine'
                             sh 'git checkout update-autobigs-engine'
@@ -30,12 +30,12 @@ pipeline {
             steps {
                 sh 'grayskull pypi autoBIGS.engine --maintainers "Harrison Deng"'
                 sh 'python patch_recipe.py'
-                sh 'cp -r autobigs-engine/* bioconda-recipes/recipes/autobigs-engine/.'
+                sh 'cp -r autobigs-engine/* auto-updated-bioconda-recipes/recipes/autobigs-engine/.'
             }
         }
         stage("lint") {
             steps {
-                dir('bioconda-recipes') {
+                dir('auto-updated-bioconda-recipes') {
                     sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
                 }
             }
@@ -50,9 +50,9 @@ pipeline {
                 TOKEN = credentials('github.com')
             }
             steps {
-                dir('bioconda-recipes') {
+                dir('auto-updated-bioconda-recipes') {
                     sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../scripts/package_latest_version.py autoBIGS.engine)."'
-                    sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/bioconda-recipes.git update-autobigs-engine'
+                    sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine'
                 }
             }
         }