From b4a5ca3a092cf1c78848c57842a15d88aabc6e05 Mon Sep 17 00:00:00 2001 From: Harrison Deng Date: Wed, 26 Feb 2025 15:00:35 +0000 Subject: [PATCH] Added initialization steps for the submodule --- Jenkinsfile | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/Jenkinsfile b/Jenkinsfile index d84a2bf..97e754d 100644 --- a/Jenkinsfile +++ b/Jenkinsfile @@ -11,6 +11,10 @@ pipeline { parallel { stage("recipes repo") { steps { + sh 'git config --global --add safe.directory /home/jenkins/agent/workspace/autoBIGS.engine-bioconda_main' + sh 'git config --global --add safe.directory /home/jenkins/agent/workspace/autoBIGS.engine-bioconda_main/auto-updated-bioconda-recipes' + sh 'git submodule init' + sh 'git submodule update' dir('auto-updated-bioconda-recipes') { sh 'git checkout update-autobigs-engine' }