ydeng/autoBIGS.engine-bioconda
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Re-merged separation process and finished initial Jenkins pipeline

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Harrison Deng
2025-02-17 15:50:33 +00:00
parent 9d117a37ea
commit 76455011db
3 changed files with 45 additions and 6 deletions
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13
Jenkinsfile vendored
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@@ -15,7 +15,7 @@ pipeline {
dir('bioconda-recipes') {
sh 'git pull'
sh 'git pull origin update-autobigs-engine'
sh 'git pull origin update-autobigs-engine'
sh 'git pull origin update-autobigs-cli'
}
}
}
@@ -44,8 +44,15 @@ pipeline {
stage("overwrite") {
steps {
dir('bioconda-recipes') {
sh 'checkout '
sh 'cp autobigs-engine/* '
sh 'git checkout -b update-autobigs-engine'
sh 'cp -r ../autobigs-engine/* recipes/autobigs-engine/.'
sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../scripts/package_latest_version.py autoBIGS.engine)."'
sh 'git push origin update-autobigs-engine'
sh 'git checkout -b update-autobigs-cli'
sh 'cp -r ../autobigs-engine/* recipes/autobigs-cli/.'
sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to $(python ../scripts/package_latest_version.py autoBIGS.engine)."'
sh 'git push origin update-autobigs-cli'
}
}
}