Added checkout to appropriate branch

.gitignore

@@ -175,4 +175,4 @@ pyrightconfig.json
 
 # End of https://www.toptal.com/developers/gitignore/api/python
 
-autobigs-engine
+autobigs-engine/*

Jenkinsfile

@@ -15,6 +15,7 @@ pipeline {
                         dir('bioconda-recipes') {
                             sh 'git pull'
                             sh 'git pull origin update-autobigs-engine'
+                            sh 'git checkout update-autobigs-engine'
                         }
                     }
                 }