ydeng/autoBIGS.engine-bioconda
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Pipeline now uses submodule for fork of recipe repo

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Harrison Deng 2025-02-26 17:25:28 +00:00
parent d9ab93e94f
commit 4c59c4a5b1
1 changed files with 8 additions and 2 deletions
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10
Jenkinsfile vendored
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@ -6,6 +6,12 @@ pipeline {
inheritFrom 'miniforge' inheritFrom 'miniforge'
} }
} }
environment {
TOOL_VER = """${sh(
returnStdout: true,
script: 'python pypi_latest_ver.py autoBIGS.engine'
)}"""
}
stages { stages {
stage("prepare") { stage("prepare") {
parallel { parallel {
@ -16,7 +22,7 @@ pipeline {
sh 'git submodule init' sh 'git submodule init'
sh 'git submodule update' sh 'git submodule update'
dir('auto-updated-bioconda-recipes') { dir('auto-updated-bioconda-recipes') {
sh 'git checkout update-autobigs-engine' sh 'git checkout -b update-autobigs-engine-${TOOL_VER}'
} }
} }
} }
@ -54,7 +60,7 @@ pipeline {
} }
steps { steps {
dir('auto-updated-bioconda-recipes') { dir('auto-updated-bioconda-recipes') {
sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../pypi_latest_ver.py autoBIGS.engine)."' sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to ${TOOL_VER}."'
sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine' sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine'
} }
} }