From 453c25e75854155170081431a5c84feb42eea6ed Mon Sep 17 00:00:00 2001
From: Harrison Deng <yunyangdeng@outlook.com>
Date: Thu, 20 Feb 2025 19:09:08 +0000
Subject: [PATCH] Fixed some publishing steps issues

---
 Jenkinsfile     | 10 ++++++----
 environment.yml |  3 ++-
 2 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 693831c..e4fe815 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -34,7 +34,7 @@ pipeline {
         stage("build") {
             steps {
                 dir('auto-updated-bioconda-recipes') {
-                    sh 'conda build recipes/autobigs-engine --output-folder ./conda-dist'
+                    sh 'conda build recipes/autobigs-engine --output-folder ./conda-bld'
                 }
             }
         }
@@ -42,14 +42,16 @@ pipeline {
             parallel {
                 stage("archive") {
                     steps {
-                        archiveArtifacts artifacts: './conda-dist/**/*.conda', followSymlinks: false
+                        archiveArtifacts artifacts: './conda-bld/**/*.conda', followSymlinks: false
                     }
                 }
                 stage("bioconda") {
                     stages {
                         stage('lint') {
                             steps {
-                                sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
+                                dir('auto-updated-bioconda-recipes') {
+                                    sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
+                                }
                             }
                         }
                         stage('commit') {
@@ -70,7 +72,7 @@ pipeline {
                         AUTH = credentials('git.reslate.systems')
                     }
                     steps {
-                        sh 'curl --user AUTH_USR:AUTH_PSW --upload-file ./conda-dist/**/*.conda https://git.reslate.systems/api/packages/${AUTH_USR}/conda/package-1.0.conda'
+                        sh 'curl --user AUTH_USR:AUTH_PSW --upload-file ./conda-bld/**/*.conda https://git.reslate.systems/api/packages/${AUTH_USR}/conda/package-1.0.conda'
                     }
                 }
             }
diff --git a/environment.yml b/environment.yml
index b3ee1b4..8449835 100644
--- a/environment.yml
+++ b/environment.yml
@@ -7,4 +7,5 @@ dependencies:
   - grayskull
   - git
   - bioconda-utils
-  - python=3.10.*
\ No newline at end of file
+  - python=3.10.*
+  - curl
\ No newline at end of file