changed to using submodule

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "auto-updated-bioconda-recipes"]
+	path = auto-updated-bioconda-recipes
+	url = https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git

Jenkinsfile

@@ -11,7 +11,6 @@ pipeline {
             parallel {
                 stage("recipes repo") {
                     steps {
-                        sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
                         dir('auto-updated-bioconda-recipes') {
                             sh 'git checkout update-autobigs-engine'
                         }
@@ -33,19 +32,10 @@ pipeline {
         }
         stage("build") {
             steps {
-                dir('auto-updated-bioconda-recipes') {
-                    sh 'conda build recipes/autobigs-engine --output-folder ./conda-bld'
+                sh 'conda build auto-updated-bioconda-recipes/recipes/autobigs-engine --output-folder ./conda-bld'
             }
         }
-        }
-        stage('publish') {
-            parallel {
-                stage("archive") {
-                    steps {
-                        archiveArtifacts artifacts: './conda-bld/**/*.conda', followSymlinks: false
-                    }
-                }
-                stage("bioconda") {
+        stage("publish to bioconda") {
             stages {
                 stage('lint') {
                     steps {
@@ -67,15 +57,5 @@ pipeline {
                 }
             }
         }
-                stage('git.reslate.systems') {
-                    environment {
-                        AUTH = credentials('git.reslate.systems')
-                    }
-                    steps {
-                        sh 'curl --user AUTH_USR:AUTH_PSW --upload-file ./conda-bld/**/*.conda https://git.reslate.systems/api/packages/${AUTH_USR}/conda/package-1.0.conda'
-                    }
-                }
-            }
-        }
     }
 }

auto-updated-bioconda-recipes

@@ -0,0 +1 @@
+Subproject commit 8bdf7d8e65ec383ff3de875814a0b67abeba6ad7

environment.yml

@@ -9,3 +9,4 @@ dependencies:
   - bioconda-utils
   - python=3.10.*
   - curl
+  - conda-verify