From 2538cf2687b63dd1f7cd8570f414180fce71b557 Mon Sep 17 00:00:00 2001
From: Harrison Deng <yunyangdeng@outlook.com>
Date: Thu, 20 Feb 2025 17:59:02 +0000
Subject: [PATCH] Moved linting stage to bioconda specific publishing stages

---
 Jenkinsfile | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 3111ab4..2b5d388 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -31,13 +31,6 @@ pipeline {
                 sh 'cp -r autobigs-engine/* auto-updated-bioconda-recipes/recipes/autobigs-engine/.'
             }
         }
-        stage("lint") {
-            steps {
-                dir('auto-updated-bioconda-recipes') {
-                    sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
-                }
-            }
-        }
         stage("build") {
             steps {
                 dir('auto-updated-bioconda-recipes') {
@@ -52,14 +45,21 @@ pipeline {
                         archiveArtifacts artifacts: './conda-dist/**/*.conda', followSymlinks: false
                     }
                 }
-                stage("commit") {
-                    environment {
-                        TOKEN = credentials('github.com')
-                    }
-                    steps {
-                        dir('auto-updated-bioconda-recipes') {
-                            sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../pypi_latest_ver.py autoBIGS.engine)."'
-                            sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine'
+                stage("bioconda") {
+                    stages {
+                        stage('lint') {
+                            sh 'bioconda-utils lint recipes/ --packages autobigs-engine'
+                        }
+                        stage('commit') {
+                            environment {
+                                TOKEN = credentials('github.com')
+                            }
+                            steps {
+                                dir('auto-updated-bioconda-recipes') {
+                                    sh 'git commit -a -m "Automatically updated autobigs-engine bioconda recipe to $(python ../pypi_latest_ver.py autoBIGS.engine)."'
+                                    sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-engine'
+                                }
+                            }
                         }
                     }
                 }