Harrison Deng
41c05cc521
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Added default MLST scheme Added multiple ways of defining a MLST scheme CSV output now shows database name for each scheme ID Now uses native argparse library for ensuring mutual exclusivity of arguments and whether or not one is required. Updated to use 0.13.* of engine
58 lines
1.1 KiB
TOML
58 lines
1.1 KiB
TOML
[build-system]
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requires = ["setuptools>=64", "setuptools_scm>=8"]
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build-backend = "setuptools.build_meta"
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[project]
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name = "autoBIGS.cli"
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dynamic = ["version"]
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readme = "README.md"
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license = {text = "GPL-3.0-or-later"}
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dependencies = [
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"autoBIGS-engine==0.13.*"
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]
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requires-python = ">=3.12"
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description = "A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases."
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[project.urls]
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Repository = "https://github.com/Syph-and-VPD-Lab/autoBIGS.cli"
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Issues = "https://github.com/Syph-and-VPD-Lab/autoBIGS.cli/issues"
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[project.scripts]
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autoBIGS = "autobigs.cli.program:run"
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[tool.setuptools_scm]
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[tool.pyright]
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extraPaths = ["src"]
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exclude = [
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"**/node_modules",
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"**/__pycache__"
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]
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executionEnvironments = [
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{root = "src"}
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]
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[tool.setuptools]
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package-dir = {"" = "src"}
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[tool.pytest.ini_options]
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testpaths = [
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"tests"
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]
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pythonpath = [
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"src"
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]
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addopts = [
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"--import-mode=importlib",
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]
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asyncio_mode = "auto"
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[tool.pylint.main]
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source-roots = "src"
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[tool.pylint.format]
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# Maximum number of characters on a single line.
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max-line-length = 88
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