42 lines
1.3 KiB
Python
42 lines
1.3 KiB
Python
import argparse
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from importlib import metadata
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from os import path
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import os
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from autobigs.cli import info, st
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from autobigs.cli.meta import get_module_base_name
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import importlib
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root_parser = argparse.ArgumentParser(epilog='Use "%(prog)s info -h" to learn how to get available MLST databases, and their available schemas.'
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+ ' Once that is done, use "%(prog)s st -h" to learn how to retrieve MLST profiles.'
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)
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subparsers = root_parser.add_subparsers(required=False)
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info.setup_parser(subparsers.add_parser(get_module_base_name(info.__name__)))
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st.setup_parser(subparsers.add_parser(get_module_base_name(st.__name__)))
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root_parser.add_argument(
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"--version",
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action="store_true",
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default=False,
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required=False,
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help="Displays the autoBIGS.CLI version, and the autoBIGS.Engine version."
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)
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def run():
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args = root_parser.parse_args()
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if args.version:
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print(f'autoBIGS.CLI is running version {
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metadata.version("autoBIGS-cli")}.')
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print(f'autoBIGS.Engine is running version {
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metadata.version("autoBIGS-engine")}.')
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if hasattr(args, "run"):
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args.run(args)
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elif not args.version:
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root_parser.print_usage()
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if __name__ == "__main__":
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run()
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