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2 changed files with 16 additions and 13 deletions

4
Jenkinsfile vendored
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@ -37,6 +37,10 @@ pipeline {
stage("publish") {
parallel {
stage ("git.reslate.systems") {
when {
branch '**/main'
}
environment {
CREDS = credentials('username-password-rs-git')
}

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@ -53,19 +53,18 @@ async def run(args: Namespace):
writer.writerows(sorted_seqdef_dbs)
print("\nDatabase output written to {0}".format(args.csv_output))
if args.list_bigsdb_schemes:
csv_scheme_rows = []
for bigsdb_scheme_name in args.list_bigsdb_schemes:
schemes = await bigsdb_index.get_schemes_for_seqdefdb(bigsdb_scheme_name)
csv_scheme_rows.extend([(name, id, bigsdb_scheme_name) for name, id in sorted(schemes.items())])
print("The following are the known schemes for \"{0}\", and their associated IDs:".format(bigsdb_scheme_name))
print("\n".join(["{0}: {1}".format(name, id) for name, id, database in csv_scheme_rows]))
if args.csv_output:
with open(args.csv_output, "w") as csv_out_handle:
writer = csv.writer(csv_out_handle)
writer.writerow(("Name", "ID", "Database Name"))
writer.writerows(csv_scheme_rows)
print("\nscheme list output written to {0}".format(args.csv_output))
csv_scheme_rows = []
for bigsdb_scheme_name in args.list_bigsdb_schemes:
schemes = await bigsdb_index.get_schemes_for_seqdefdb(bigsdb_scheme_name)
csv_scheme_rows.extend([(name, id, bigsdb_scheme_name) for name, id in sorted(schemes.items())])
print("The following are the known schemes for \"{0}\", and their associated IDs:".format(bigsdb_scheme_name))
print("\n".join(["{0}: {1}".format(name, id) for name, id, database in csv_scheme_rows]))
if args.csv_output:
with open(args.csv_output, "w") as csv_out_handle:
writer = csv.writer(csv_out_handle)
writer.writerow(("Name", "ID", "Database Name"))
writer.writerows(csv_scheme_rows)
print("\nscheme list output written to {0}".format(args.csv_output))
def run_asynchronously(args: Namespace):
asyncio.run(run(args))