70e99f3639
Now splitting multiple fasta paths by comma
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2025-02-27 18:31:37 +00:00
48905f968f
Fixed scheme name argument not converting to ID
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Added additional error messages to help user with usage.
2025-02-27 04:55:43 +00:00
41c05cc521
Increased user friendliness
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Added default MLST scheme
Added multiple ways of defining a MLST scheme
CSV output now shows database name for each scheme ID
Now uses native argparse library for ensuring mutual exclusivity of arguments and whether or not one is required.
Updated to use 0.13.* of engine
2025-02-26 07:37:34 +00:00
a4d8de7cc6
Changing CSV argument to --csv or -o
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2025-02-19 19:57:15 +00:00
af9c8c70b8
Stop on fail argument now works
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2025-02-19 15:50:18 +00:00
319edf36af
Added option to output database and schemas lists to CSV
2025-02-19 15:01:57 +00:00
e2f19acd5a
Updated CLI to follow APIs specified by the 0.12.0 engine
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2025-02-18 16:33:08 +00:00
419aa36e9d
Removed unused parameter for typing
2025-02-13 21:56:20 +00:00
ca28068477
Made database name list predictable (sorted)
2025-02-13 21:56:06 +00:00
32dcfd99f8
Updated to reflect changes in Engine 0.10.*
2025-02-12 21:54:34 +00:00
4eca35a556
Fixed --version not showing
2025-02-11 16:56:04 +00:00
f263d380ca
Base command now requires parameter.
2025-01-24 19:09:28 +00:00
9498fe7a45
Updated module imports
2025-01-22 21:36:45 +00:00
