Updated module imports

pyproject.toml

@@ -7,14 +7,18 @@ name = "autoBIGS.cli"
 dynamic = ["version"]
 readme = "README.md"
 
+[project.urls]
+Repository = "https://github.com/RealYHD/autoBIGS.cli"
+Issues = "https://github.com/RealYHD/autoBIGS.cli/issues"
+
 dependencies = [
-    "autoBIGS-engine"
+    "autoBIGS.engine"
 ]
 requires-python = ">=3.11"
 description = "A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases."
 
 [project.scripts]
-autoBIGS = "autoBIGS.cli.program:run"
+autoBIGS = "autobigs.cli.program:run"
 
 [tool.setuptools_scm]
 

requirements.txt

@@ -4,4 +4,4 @@ pytest-cov
 build
 twine
 setuptools_scm
-autobigsst.engine
+autoBIGS.engine

src/autobigs/cli/info.py

@@ -1,6 +1,6 @@
 from argparse import ArgumentParser, Namespace
 import asyncio
-from autoBIGS.engine.data.remote.databases.bigsdb import BIGSdbIndex
+from autobigs.engine.data.remote.databases.bigsdb import BIGSdbIndex
 
 def setup_parser(parser: ArgumentParser):
     parser.description = "Fetches the latest BIGSdb MLST database definitions."

src/autobigs/cli/program.py

@@ -3,8 +3,8 @@ from importlib import metadata
 from os import path
 import os
 
-from autoBIGS.cli import info, st
-from autoBIGS.cli.meta import get_module_base_name
+from autobigs.cli import info, st
+from autobigs.cli.meta import get_module_base_name
 import importlib
 
 root_parser = argparse.ArgumentParser(epilog='Use "%(prog)s info -h" to learn how to get available MLST databases, and their available schemas.'

src/autobigs/cli/st.py

@@ -2,9 +2,9 @@
 from argparse import ArgumentParser, Namespace
 import asyncio
 import datetime
-from autoBIGS.engine.data.local.csv import write_mlst_profiles_as_csv
-from autoBIGS.engine.data.local.fasta import read_multiple_fastas
-from autoBIGS.engine.data.remote.databases.bigsdb import BIGSdbIndex
+from autobigs.engine.data.local.csv import write_mlst_profiles_as_csv
+from autobigs.engine.data.local.fasta import read_multiple_fastas
+from autobigs.engine.data.remote.databases.bigsdb import BIGSdbIndex
 
 
 def setup_parser(parser: ArgumentParser):