Updated module imports

This commit is contained in:
2025-01-22 21:36:45 +00:00
parent 6305f5dbc9
commit 9498fe7a45
7 changed files with 13 additions and 9 deletions

View File

@@ -0,0 +1,39 @@
import argparse
from importlib import metadata
from os import path
import os
from autobigs.cli import info, st
from autobigs.cli.meta import get_module_base_name
import importlib
root_parser = argparse.ArgumentParser(epilog='Use "%(prog)s info -h" to learn how to get available MLST databases, and their available schemas.'
+ ' Once that is done, use "%(prog)s st -h" to learn how to retrieve MLST profiles.'
)
subparsers = root_parser.add_subparsers(required=False)
info.setup_parser(subparsers.add_parser(get_module_base_name(info.__name__)))
st.setup_parser(subparsers.add_parser(get_module_base_name(st.__name__)))
root_parser.add_argument(
"--version",
action="store_true",
default=False,
required=False,
help="Displays the autoBIGS.CLI version, and the autoBIGS.Engine version."
)
def run():
args = root_parser.parse_args()
if args.version:
print(f'autoBIGS.CLI is running version {
metadata.version("autoBIGS-cli")}.')
print(f'autoBIGS.Engine is running version {
metadata.version("autoBIGS-engine")}.')
if hasattr(args, "run"):
args.run(args)
if __name__ == "__main__":
run()