Updated module imports

This commit is contained in:
2025-01-22 21:36:45 +00:00
parent 6305f5dbc9
commit 9498fe7a45
7 changed files with 13 additions and 9 deletions

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@@ -1,6 +1,6 @@
from argparse import ArgumentParser, Namespace
import asyncio
from autoBIGS.engine.data.remote.databases.bigsdb import BIGSdbIndex
from autobigs.engine.data.remote.databases.bigsdb import BIGSdbIndex
def setup_parser(parser: ArgumentParser):
parser.description = "Fetches the latest BIGSdb MLST database definitions."

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@@ -3,8 +3,8 @@ from importlib import metadata
from os import path
import os
from autoBIGS.cli import info, st
from autoBIGS.cli.meta import get_module_base_name
from autobigs.cli import info, st
from autobigs.cli.meta import get_module_base_name
import importlib
root_parser = argparse.ArgumentParser(epilog='Use "%(prog)s info -h" to learn how to get available MLST databases, and their available schemas.'

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@@ -2,9 +2,9 @@
from argparse import ArgumentParser, Namespace
import asyncio
import datetime
from autoBIGS.engine.data.local.csv import write_mlst_profiles_as_csv
from autoBIGS.engine.data.local.fasta import read_multiple_fastas
from autoBIGS.engine.data.remote.databases.bigsdb import BIGSdbIndex
from autobigs.engine.data.local.csv import write_mlst_profiles_as_csv
from autobigs.engine.data.local.fasta import read_multiple_fastas
from autobigs.engine.data.remote.databases.bigsdb import BIGSdbIndex
def setup_parser(parser: ArgumentParser):