From 419aa36e9d8a25d8e6fe25c85fb26d59fd53a996 Mon Sep 17 00:00:00 2001 From: Harrison Deng Date: Thu, 13 Feb 2025 21:56:20 +0000 Subject: [PATCH] Removed unused parameter for typing --- out.csv | 0 src/autobigs/cli/st.py | 2 +- 2 files changed, 1 insertion(+), 1 deletion(-) create mode 100644 out.csv diff --git a/out.csv b/out.csv new file mode 100644 index 0000000..e69de29 diff --git a/src/autobigs/cli/st.py b/src/autobigs/cli/st.py index 840ccf6..c4f2112 100644 --- a/src/autobigs/cli/st.py +++ b/src/autobigs/cli/st.py @@ -50,7 +50,7 @@ async def run(args: Namespace): async with BIGSdbIndex() as bigsdb_index: gen_strings = read_multiple_fastas(args.fastas) async with await bigsdb_index.build_profiler_from_seqdefdb(False, args.seqdefdb, args.schema) as mlst_profiler: - mlst_profiles = mlst_profiler.profile_multiple_strings(gen_strings, exact=args.exact) + mlst_profiles = mlst_profiler.profile_multiple_strings(gen_strings) failed = await write_mlst_profiles_as_csv(mlst_profiles, args.out) if len(failed) > 0: print(f"A total of {len(failed)} IDs failed:\n{"\n".join(failed)}")