Fixed --csv output being blank when listing dbs
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automlst.cli/pipeline/head Something is wrong with the build of this commit
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@ -53,18 +53,19 @@ async def run(args: Namespace):
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writer.writerows(sorted_seqdef_dbs)
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print("\nDatabase output written to {0}".format(args.csv_output))
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csv_scheme_rows = []
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for bigsdb_scheme_name in args.list_bigsdb_schemes:
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schemes = await bigsdb_index.get_schemes_for_seqdefdb(bigsdb_scheme_name)
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csv_scheme_rows.extend([(name, id, bigsdb_scheme_name) for name, id in sorted(schemes.items())])
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print("The following are the known schemes for \"{0}\", and their associated IDs:".format(bigsdb_scheme_name))
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print("\n".join(["{0}: {1}".format(name, id) for name, id, database in csv_scheme_rows]))
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if args.csv_output:
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with open(args.csv_output, "w") as csv_out_handle:
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writer = csv.writer(csv_out_handle)
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writer.writerow(("Name", "ID", "Database Name"))
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writer.writerows(csv_scheme_rows)
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print("\nscheme list output written to {0}".format(args.csv_output))
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if args.list_bigsdb_schemes:
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csv_scheme_rows = []
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for bigsdb_scheme_name in args.list_bigsdb_schemes:
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schemes = await bigsdb_index.get_schemes_for_seqdefdb(bigsdb_scheme_name)
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csv_scheme_rows.extend([(name, id, bigsdb_scheme_name) for name, id in sorted(schemes.items())])
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print("The following are the known schemes for \"{0}\", and their associated IDs:".format(bigsdb_scheme_name))
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print("\n".join(["{0}: {1}".format(name, id) for name, id, database in csv_scheme_rows]))
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if args.csv_output:
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with open(args.csv_output, "w") as csv_out_handle:
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writer = csv.writer(csv_out_handle)
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writer.writerow(("Name", "ID", "Database Name"))
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writer.writerows(csv_scheme_rows)
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print("\nscheme list output written to {0}".format(args.csv_output))
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def run_asynchronously(args: Namespace):
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asyncio.run(run(args))
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