Harrison Deng
f987417bd3
Some checks reported errors
autoBIGS.cli-bioconda/pipeline/head Something is wrong with the build of this commit
71 lines
2.5 KiB
Groovy
71 lines
2.5 KiB
Groovy
pipeline {
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agent {
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kubernetes {
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cloud 'rsys-devel'
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defaultContainer 'miniforge3'
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inheritFrom 'miniforge'
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}
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}
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stages {
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stage("prepare") {
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parallel {
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stage("recipes repo") {
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steps {
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sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
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dir('auto-updated-bioconda-recipes') {
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sh 'git pull'
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sh 'git pull origin update-autobigs-cli'
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sh 'git checkout update-autobigs-cli'
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}
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}
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}
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stage("conda") {
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steps {
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sh 'conda env update -n base --file environment.yml'
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}
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}
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stage("generate recipe") {
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steps {
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sh 'grayskull pypi autoBIGS.cli --maintainers "Harrison Deng"'
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sh 'python patch_recipe.py'
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}
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}
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}
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}
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stage("update repo") {
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steps {
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sh 'cp -r autobigs-cli/* auto-updated-bioconda-recipes/recipes/autobigs-cli/.'
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sh 'cat auto-updated-bioconda-recipes/recipes/autobigs-cli/meta.yaml'
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}
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}
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stage("lint") {
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steps {
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container(miniforge3) {
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dir('auto-updated-bioconda-recipes') {
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sh 'conda -n install python=3.10 bioconda-utils'
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sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
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}
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}
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}
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}
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stage("build") {
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'conda install autobigs-engine=$(python ../pypi_latest_ver.py autoBIGS.engine)'
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sh 'conda build recipes/autobigs-cli'
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}
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}
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}
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stage("commit") {
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environment {
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TOKEN = credentials('github.com')
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}
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to $(python ../pypi_latest_ver.py autoBIGS.cli)."'
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sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-cli'
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}
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}
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}
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}
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} |