diff --git a/Jenkinsfile b/Jenkinsfile
index 742dc9d..653e94a 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -12,6 +12,9 @@ pipeline {
                 stage("recipes repo") {
                     steps {
                         sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
+                        dir('auto-updated-bioconda-recipes') {
+                            sh 'git checkout update-autobigs-cli'
+                        }
                     }
                 }
                 stage("conda") {