Added way to fetch bioconda dependency

.gitignore

@@ -176,4 +176,4 @@ pyrightconfig.json
 # End of https://www.toptal.com/developers/gitignore/api/python
 
 autobigs-engine/*
-bioconda-recipes/*
+auto-updated-bioconda-recipes/*

Jenkinsfile

@@ -24,26 +24,32 @@ pipeline {
                         sh 'conda env update -n base --file environment.yml'
                     }
                 }
+                stage("generate recipe") {
+                    sh 'grayskull pypi autoBIGS.cli --maintainers "Harrison Deng"'
+                    sh 'python patch_recipe.py'
+                }
             }
         }
-        stage("generate recipe") {
+        stage("update repo") {
             steps {
-                sh 'grayskull pypi autoBIGS.cli --maintainers "Harrison Deng"'
-                sh 'python patch_recipe.py'
                 sh 'cp -r autobigs-cli/* auto-updated-bioconda-recipes/recipes/autobigs-cli/.'
                 sh 'cat auto-updated-bioconda-recipes/recipes/autobigs-cli/meta.yaml'
             }
         }
         stage("lint") {
             steps {
-                dir('auto-updated-bioconda-recipes') {
+                container(miniforge3) {
-                    sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
+                    dir('auto-updated-bioconda-recipes') {
+                        sh 'conda -n install python=3.10 bioconda-utils'
+                        sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
+                    }
                 }
             }
         }
         stage("build") {
             steps {
                 dir('auto-updated-bioconda-recipes') {
+                    sh 'conda install autobigs-engine=$(python ../pypi_latest_ver.py autoBIGS.engine)'
                     sh 'conda build recipes/autobigs-cli'
                 }
             }

environment.yml

@@ -6,6 +6,3 @@ dependencies:
   - conda-build
   - grayskull
   - git
-  - bioconda-utils
-  - python=3.10.*
-  - autobigs-engine